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NECEvent2014_8_4_Clostridium_paraputrificum_31_73

NECEvent2014_8_4_Clostridium_30_41
In projects: NECEvent2014_8_4

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_8_4_UNK

Properties

Avg. coverage: 40.70 Longest contig: 131.52 Kbp Bin length: 3.62 Mbp GC content: 29.74 %
Contigs count: 115 Features count: 3619 rRNAs count: 0 tRNAs count: 47

Genome completeness

near complete RP 50 / 55 BSCG 51 / 51 ASCG 15 / 38 MC: 2

Description

ID based on rpS3

Displaying items 51-100 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_715 178_004_scaffold_715
Genus: Clostridium (100%)
5 8983 bp 29.26 39.16 89.47
NECEvent2014_8_4_scaffold_312 178_004_scaffold_312
Genus: Clostridium (60%)
15 17174 bp 29.23 39.00 84.41
NECEvent2014_8_4_scaffold_277 178_004_scaffold_277
Genus: Clostridium (69.57%)
23 18539 bp 28.81 38.15 90.02
NECEvent2014_8_4_scaffold_107 178_004_scaffold_107
Genus: Clostridium (60%)
30 31550 bp 29.70 37.78 89.36
NECEvent2014_8_4_scaffold_15 178_004_scaffold_15
Genus: Clostridium (72.22%)
90 91281 bp 29.44 37.50 88.99
NECEvent2014_8_4_scaffold_54 178_004_scaffold_54
Genus: Clostridium (90.91%)
55 51801 bp 29.59 37.40 91.93
NECEvent2014_8_4_scaffold_627 178_004_scaffold_627
Genus: Clostridium (83.33%)
12 9966 bp 29.74 37.25 89.67
NECEvent2014_8_4_scaffold_39 178_004_scaffold_39
Genus: Clostridium (53.97%)
63 57806 bp 29.70 37.04 86.23
NECEvent2014_8_4_scaffold_120 178_004_scaffold_120
Genus: Clostridium (58.54%)
41 30130 bp 27.66 36.94 69.79
NECEvent2014_8_4_scaffold_25 178_004_scaffold_25
Genus: Clostridium (77.36%)
53 68061 bp 28.95 36.89 89.57
NECEvent2014_8_4_scaffold_3 178_004_scaffold_3
Genus: Clostridium (66.67%)
129 126669 bp 29.89 36.82 89.17
NECEvent2014_8_4_scaffold_14 178_004_scaffold_14
Genus: Clostridium (82.18%)
101 97689 bp 29.50 36.80 91.83
NECEvent2014_8_4_scaffold_247 178_004_scaffold_247
Genus: Clostridium (81.82%)
22 19698 bp 28.49 36.48 82.31
NECEvent2014_8_4_scaffold_1142 178_004_scaffold_1142
Genus: Clostridium (50%)
4 5578 bp 28.85 36.46 87.02
NECEvent2014_8_4_scaffold_205 178_004_scaffold_205
Genus: Clostridium (78.95%)
19 21984 bp 29.35 36.45 91.83
NECEvent2014_8_4_scaffold_125 178_004_scaffold_125
Genus: Clostridium (67.44%)
43 29667 bp 29.21 36.12 88.54
NECEvent2014_8_4_scaffold_49 178_004_scaffold_49
Genus: Clostridium (53.7%)
54 52359 bp 29.58 36.08 88.19
NECEvent2014_8_4_scaffold_424 178_004_scaffold_424
Order: Clostridiales (100%)
9 13669 bp 27.59 35.99 91.21
NECEvent2014_8_4_scaffold_102 178_004_scaffold_102
Genus: Clostridium (82.76%)
29 32877 bp 29.76 35.77 88.78
NECEvent2014_8_4_scaffold_339 178_004_scaffold_339
Genus: Clostridium (63.64%)
11 16185 bp 29.68 35.76 90.27
NECEvent2014_8_4_scaffold_9 178_004_scaffold_9
Genus: Clostridium (81.37%)
102 106229 bp 29.71 35.31 89.73
NECEvent2014_8_4_scaffold_1773 178_004_scaffold_1773
Genus: Clostridium (75%)
4 3622 bp 27.89 35.20 95.58
NECEvent2014_8_4_scaffold_1082 178_004_scaffold_1082
Genus: Clostridium (83.33%)
6 5921 bp 29.64 35.19 88.11
NECEvent2014_8_4_scaffold_340 178_004_scaffold_340
Genus: Clostridium (77.78%)
18 16173 bp 29.32 34.75 88.76
NECEvent2014_8_4_scaffold_78 178_004_scaffold_78
Genus: Clostridium (60%)
30 37882 bp 29.03 34.58 92.43
NECEvent2014_8_4_scaffold_319 178_004_scaffold_319
Genus: Clostridium (89.47%)
19 17003 bp 28.72 34.37 88.66
NECEvent2014_8_4_scaffold_59 178_004_scaffold_59
Genus: Clostridium (91.49%)
47 47651 bp 29.31 34.24 87.63
NECEvent2014_8_4_scaffold_29 178_004_scaffold_29
Genus: Clostridium (83.33%)
78 63279 bp 29.25 34.21 92.00
NECEvent2014_8_4_scaffold_100 178_004_scaffold_100
Genus: Clostridium (75.68%)
37 33403 bp 29.71 33.88 87.11
NECEvent2014_8_4_scaffold_914 178_004_scaffold_914
Genus: Clostridium (77.78%)
9 12251 bp 28.90 33.81 89.75
NECEvent2014_8_4_scaffold_400 178_004_scaffold_400
Genus: Clostridium (93.75%)
16 14239 bp 28.33 33.60 81.35
NECEvent2014_8_4_scaffold_238 178_004_scaffold_238
Genus: Clostridium (60%)
20 19931 bp 28.48 33.51 90.28
NECEvent2014_8_4_scaffold_261 178_004_scaffold_261
Genus: Clostridium (52.63%)
38 19229 bp 29.23 33.39 93.69
NECEvent2014_8_4_scaffold_220 178_004_scaffold_220
Genus: Clostridium (88%)
25 20908 bp 28.93 33.33 93.83
NECEvent2014_8_4_scaffold_949 178_004_scaffold_949
Order: Clostridiales (71.43%)
7 6854 bp 27.82 33.29 73.23
NECEvent2014_8_4_scaffold_109 178_004_scaffold_109
Genus: Clostridium (89.66%)
29 31187 bp 28.80 33.10 90.40
NECEvent2014_8_4_scaffold_753 178_004_scaffold_753
Genus: Clostridium (62.5%)
8 8612 bp 29.05 32.83 92.10
NECEvent2014_8_4_scaffold_210 178_004_scaffold_210
Phylum: Firmicutes (61.9%)
21 21680 bp 27.78 32.61 86.57
NECEvent2014_8_4_scaffold_43 178_004_scaffold_43
Genus: Clostridium (77.36%)
53 54322 bp 28.88 32.54 91.23
NECEvent2014_8_4_scaffold_413 178_004_scaffold_413
Genus: Clostridium (60%)
15 13946 bp 29.11 32.24 85.94
NECEvent2014_8_4_scaffold_387 178_004_scaffold_387
Genus: Clostridium (69.23%)
13 14570 bp 28.60 32.00 90.25
NECEvent2014_8_4_scaffold_375 178_004_scaffold_375
Genus: Clostridium (56.25%)
16 14906 bp 28.73 31.73 85.35
NECEvent2014_8_4_scaffold_3692 178_004_scaffold_3692
Species: Clostridium perfringens (100%)
2 1683 bp 28.52 31.64 76.29
NECEvent2014_8_4_scaffold_211 178_004_scaffold_211
Genus: Clostridium (77.27%)
22 21668 bp 28.66 31.41 91.67
NECEvent2014_8_4_scaffold_382 178_004_scaffold_382
Order: Clostridiales (82.35%)
17 14755 bp 28.76 31.09 82.79
NECEvent2014_8_4_scaffold_718 178_004_scaffold_718
Order: Clostridiales (55.56%)
9 8925 bp 29.08 31.01 75.66
NECEvent2014_8_4_scaffold_248 178_004_scaffold_248
Genus: Clostridium (65%)
20 19669 bp 28.78 30.99 86.74
NECEvent2014_8_4_scaffold_797 178_004_scaffold_797
Phylum: Firmicutes (85.71%)
7 8198 bp 30.01 30.98 89.88
NECEvent2014_8_4_scaffold_497 178_004_scaffold_497
Genus: Clostridium (58.33%)
12 12062 bp 28.80 30.94 89.46
NECEvent2014_8_4_scaffold_414 178_004_scaffold_414
Genus: Clostridium (66.67%)
15 13945 bp 29.04 30.73 85.39
Displaying items 51-100 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.