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NECEvent2014_8_6_scaffold_149

Alias: 178_006_scaffold_149

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_6_scaffold_149_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1196)
DNA (1194bp) protein (398aa)
Elongation factor Tu n=5 Tax=Clostridium butyricum RepID=B1QUE9_CLOBU rbh
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyr
tuf1; elongation factor Tu
NECEvent2014_8_6_scaffold_149_trna_3
unknown

Not on your lists

comp(1198..1270)
DNA (73bp)
transferRNA
NECEvent2014_8_6_scaffold_149_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1348..1968)
DNA (621bp) protein (207aa)
RNA polymerase sigma-H factor n=3 Tax=Clostridium butyricum RepID=C4IF71_CLOBU rbh
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EEP55192.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
sigH; RNA polymerase sigma-H factor SigH
NECEvent2014_8_6_scaffold_149_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2056..2568)
DNA (513bp) protein (171aa)
Tetracycline resistance protein n=2 Tax=Clostridium butyricum RepID=M8K1R4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ87855.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_8_6_scaffold_149_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2579..3412)
DNA (834bp) protein (278aa)
23S rRNA (Guanosine-2'-O-)-methyltransferase rlmB {ECO:0000313|EMBL:KJZ87842.1}; EC=2.1.1.- {ECO:0000313|EMBL:KJZ87842.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clos
RNA methyltransferase, TrmH family, group 3 n=2 Tax=Clostridium butyricum RepID=M8JF23_CLOBU rbh
RNA methyltransferase
NECEvent2014_8_6_scaffold_149_5
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3443..3856)
DNA (414bp) protein (138aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Mini-ribonuclease 3 n=2 Tax=Clostridium butyricum RepID=M8JGD9_CLOBU
NECEvent2014_8_6_scaffold_149_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3909..5309)
DNA (1401bp) protein (467aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysS; cysteine--tRNA ligase CysS (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Clostridium butyricum RepID=M8J662_CLOBU rbh
NECEvent2014_8_6_scaffold_149_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5328..7040)
DNA (1713bp) protein (571aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1523154 species="Bacteria; Firmi
proS; proline--tRNA ligase ProS (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9X1_CLOBU rbh
NECEvent2014_8_6_scaffold_149_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7487..8161)
DNA (675bp) protein (225aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=4 Tax=Clostridium butyricum RepID=B1R1P2_CLOBU rbh
NECEvent2014_8_6_scaffold_149_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8188..9303)
DNA (1116bp) protein (372aa)
Pin/tram domain protein n=4 Tax=Clostridium butyricum RepID=B1R1P3_CLOBU rbh
Membrane-associated protein containing RNA-binding TRAM domain and ribonuclease PIN-domain, YacL {ECO:0000313|EMBL:KJZ87838.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
yacL; PIN and TRAM-domain containing protein YacL
NECEvent2014_8_6_scaffold_149_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9564..9965
DNA (402bp) protein (134aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1P4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30457.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_6_scaffold_149_11
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10043..11125)
DNA (1083bp) protein (361aa)
DNA integrity scanning protein DisA n=5 Tax=Clostridium butyricum RepID=B1R1P5_CLOBU rbh
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-R
disA; DNA integrity scanning protein DisA
NECEvent2014_8_6_scaffold_149_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11343..12719)
DNA (1377bp) protein (459aa)
DNA repair protein radA n=4 Tax=Clostridium butyricum RepID=B1R1P6_CLOBU rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
radA; DNA repair protein RadA
NECEvent2014_8_6_scaffold_149_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12913..13080
DNA (168bp) protein (56aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1P7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87837.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
NECEvent2014_8_6_scaffold_149_14
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13285..13512
DNA (228bp) protein (76aa)
Glutaredoxin-like protein, YruB-family n=4 Tax=Clostridium butyricum RepID=R0A1S4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84909.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
glutaredoxin-like protein, YruB-family
NECEvent2014_8_6_scaffold_149_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13575..13802)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JGF1_CLOBU
Glutaredoxin {ECO:0000313|EMBL:KJZ87854.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_8_6_scaffold_149_16
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13805..14740)
DNA (936bp) protein (312aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
34.2 kDa protein in rubredoxin operon (EC:1.8.1.-)
Thioredoxin reductase n=2 Tax=Clostridium butyricum RepID=M8J674_CLOBU rbh
NECEvent2014_8_6_scaffold_149_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15129..17573)
DNA (2445bp) protein (815aa)
Putative negative regulator of genetic competence MecB/ClpC n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9Y4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30450.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
clpB1; chaperone protein ClpB
NECEvent2014_8_6_scaffold_149_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17598..18611)
DNA (1014bp) protein (338aa)
Putative ATP:guanido phosphotransferase YacI {ECO:0000313|EMBL:KJZ87851.1}; EC=2.7.3.- {ECO:0000313|EMBL:KJZ87851.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridi
putative ATP:guanido phosphotransferase (EC:2.7.3.-)
Putative ATP:guanido phosphotransferase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K1S8_CLOBU rbh
NECEvent2014_8_6_scaffold_149_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18592..19176)
DNA (585bp) protein (195aa)
McsA n=3 Tax=Clostridium butyricum RepID=B1R1Q3_CLOBU rbh
UvrB/UvrC protein {ECO:0000313|EMBL:EEP55650.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL52
hypothetical protein
NECEvent2014_8_6_scaffold_149_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19191..19649)
DNA (459bp) protein (153aa)
Transcriptional regulator CtsR n=4 Tax=Clostridium butyricum RepID=B1R1Q4_CLOBU rbh
Transcriptional regulator CtsR {ECO:0000313|EMBL:KJZ87839.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ctsR; transcriptional regulator CtsR
NECEvent2014_8_6_scaffold_149_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19930..20574
DNA (645bp) protein (215aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1R1Q5_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:EEP55482.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
zinc-dependent hydrolase
NECEvent2014_8_6_scaffold_149_22
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20650..20820)
DNA (171bp) protein (57aa)
Conserved domain protein n=4 Tax=Clostridium butyricum RepID=B1R1Q6_CLOBU
Signal peptidase-like protein {ECO:0000313|EMBL:KJZ84926.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
fdxA; 4Fe-4S ferredoxin FdxA
NECEvent2014_8_6_scaffold_149_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20942..21145)
DNA (204bp) protein (68aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1Q7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87853.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
copper chaperone
NECEvent2014_8_6_scaffold_149_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21156..22061)
DNA (906bp) protein (302aa)
PSP1 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1Q8_CLOBU rbh
PSP1 protein {ECO:0000313|EMBL:ETI92036.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
PSP1 domain-containing protein
NECEvent2014_8_6_scaffold_149_25
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22065..22997)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AE74_CLOBU rbh
ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative regulator of genetic competence clcC/mecB {ECO:0000313|EMBL:KJZ84921.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostr
DNA polymerase III, gamma/tau subunit
NECEvent2014_8_6_scaffold_149_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23016..23348)
DNA (333bp) protein (111aa)
Protein from nitrogen regulatory protein P-II n=4 Tax=Clostridium butyricum RepID=B1R1R0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30441.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_6_scaffold_149_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23491..24126)
DNA (636bp) protein (212aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1523154 species="Bacteria; Firmicutes; Clostri
tmk; thymidylate kinase Tmk (EC:2.7.4.9)
Thymidylate kinase n=2 Tax=Clostridium butyricum RepID=M8K9Z5_CLOBU rbh
NECEvent2014_8_6_scaffold_149_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24232..24417)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8K1U0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30439.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_6_scaffold_149_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24623..25789
DNA (1167bp) protein (389aa)
abgB1; p-aminobenzoyl-glutamate hydrolase subunit B (EC:3.5.1.-)
Amidohydrolase n=2 Tax=Clostridium butyricum RepID=B1R1R3_CLOBU rbh
Amidohydrolase {ECO:0000313|EMBL:EEP55453.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.
Displaying items 1-30 of 33 in total

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