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NECEvent2014_8_6_scaffold_187_25

Organism: NECEvent2014_8_6_Escherichia_coli_51_30_partial

partial RP 28 / 55 MC: 5 BSCG 23 / 51 MC: 1 ASCG 10 / 38 MC: 1
Location: comp(18170..18385)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock-like protein CspB n=304 Tax=Escherichia coli RepID=CSPB_ECOLI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 71.0
  • Bit_score: 147
  • Evalue 6.00e-33
Qin prophage; cold shock protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 71.0
  • Bit_score: 147
  • Evalue 1.70e-33
Cold shock protein CspA {ECO:0000313|EMBL:END92474.1}; TaxID=1125642 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 71.0
  • Bit_score: 147
  • Evalue 8.40e-33

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 216
ATGTCAAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCTGATAAAGGTTTCGGCTTTATTTCTCCTGTTGATGGTAGTAAAGATGTGTTTGTGCATTTTTCTGCGATTCAGAATGATAATTATCGAACCTTATTTGAAGGTCAAAAGGTTACCTTCTCTATAGAGAGTGGTGCTAAAGGTCCTGCAGCAGCAAATGTCATCATTACTGATTAA
PROTEIN sequence
Length: 72
MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKGPAAANVIITD*