ggKbase home page

PLM1_100_b1_sep16_scaffold_3355

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_3355_1
Pyrococcus yayanosii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(3..428)
DNA (426bp) protein (142aa)
dTDP-4-dehydrorhamnose reductase Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AHQ0_PYRYC
dTDP-4-dehydrorhamnose reductase
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AEH25428.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus yayanosii (strain CH1 / JCM 16557).;"
PLM1_100_b1_sep16_scaffold_3355_2
GWA2_OD1_50_10_part, Parcubacteria, Bacteria

Not on your lists

comp(439..1356)
DNA (918bp) protein (306aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:KKW15561.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10b.;"
dTDP-glucose 4,6-dehydratase bin=GWA2_OP3_52_12 species=Halanaerobium saccharolyticum genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
PLM1_100_b1_sep16_scaffold_3355_3
Methanocaldococcus sp. JH146, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(1395..1961)
DNA (567bp) protein (189aa)
dTDP-4-dehydrorhamnose 3,5-epimerase Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7R9_METTP
putative dTDP-4-deoxyrhamnose 3,5 epimerase
Putative dTDP-4-deoxyrhamnose 3,5 epimerase {ECO:0000313|EMBL:AIJ04937.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus sp. JH146.;"
PLM1_100_b1_sep16_scaffold_3355_4
unknown

Not on your lists

2009..2419
DNA (411bp) protein (137aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_3355_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2547..2954)
DNA (408bp) protein (136aa)
Glucose-1-phosphate thymidyltransferase bin=GWA2_OP3_52_12 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
glucose-1-phosphate thymidylyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_3355_6
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(3228..4499)
DNA (1272bp) protein (424aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA252-N07 RepID=UPI000377DB34
UDP-N-acetylglucosamine 2-epimerase
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM1_100_b1_sep16_scaffold_3355_7
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

comp(5087..6469)
DNA (1383bp) protein (461aa)
Two-component response regulator bin=GWA2_Planctomycetia_40_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
PLM1_100_b1_sep16_scaffold_3355_8
S_Thermodesulfobacterium_commune_37_35, Thermodesulfbacterales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(6500..7642)
DNA (1143bp) protein (381aa)
histidine kinase Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B741F6
histidine kinase
Tax=S_Thermodesulfobacterium_commune_37_35
PLM1_100_b1_sep16_scaffold_3355_9
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

8200..10311
DNA (2112bp) protein (704aa)
Multi-sensor signal transduction histidine kinase bin=GWA2_OP3_52_12 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
sensor histidine kinase, GAF domain-containing
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM1_100_b1_sep16_scaffold_3355_10
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

10339..11742
DNA (1404bp) protein (468aa)
Sigma-54-dependent transcriptional response regulator Tax=Geobacter sulfurreducens RepID=D7AKD7_GEOSK
sigma-54-dependent transcriptional response regulator
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM1_100_b1_sep16_scaffold_3355_11
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

11744..13060
DNA (1317bp) protein (439aa)
UDP-glucose 6-dehydrogenase bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
nucleotide sugar dehydrogenase
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM1_100_b1_sep16_scaffold_3355_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13282..16878)
DNA (3597bp) protein (1199aa)
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
secA; protein translocase subunit SecA
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_3355_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16989..17789)
DNA (801bp) protein (267aa)
Glutamate racemase bin=GWF2_Nitrospirae_44_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
murI; glutamate racemase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_3355_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17798..18895)
DNA (1098bp) protein (366aa)
Putative Radical SAM domain protein Tax=Nitrospina gracilis 3/211 RepID=M1Z2D9_9BACT
DNA repair photolyase-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_3355_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18911..19363)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1YW58_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_3355_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19371..20135)
DNA (765bp) protein (255aa)
Glycosyl transferase family 2 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FKY1_DESAA
family 2 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 16 items

View Taxonomy