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PLM1_30_b1_sep16_scaffold_271

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_271_1
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1705
DNA (1704bp) protein (568aa)
glutamate dehydrogenase (EC:1.4.1.2)
NAD-glutamate dehydrogenase Tax=Thauera phenylacetica B4P RepID=N6YTU1_9RHOO
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:ENO97711.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
PLM1_30_b1_sep16_scaffold_271_2
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

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1702..2514
DNA (813bp) protein (271aa)
Alpha/beta hydrolase fold protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TG80_9CHLR
hydrolase
Tax=CG_Anaero_02
PLM1_30_b1_sep16_scaffold_271_3
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2545..2937)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FDX0_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH99824.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_30_b1_sep16_scaffold_271_4
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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comp(2934..4121)
DNA (1188bp) protein (396aa)
Uncharacterized protein Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XTW1_MICPN
hypothetical protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_30_b1_sep16_scaffold_271_5

Not on your lists

comp(4255..5088)
DNA (834bp) protein (278aa)
imidazole glycerol phosphate synthase subunit HisF (EC:5.3.1.16)
Imidazole glycerol phosphate synthase, cyclase subunit HisF Tax=uncultured prokaryote RepID=H5SPJ1_9ZZZZ
Imidazole glycerol phosphate synthase, cyclase subunit HisF {ECO:0000313|EMBL:BAL58077.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
PLM1_30_b1_sep16_scaffold_271_6
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5085..5840)
DNA (756bp) protein (252aa)
priA; phosphoribosyl isomerase A (EC:5.3.1.24)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000313|EMBL:CAN02077.1};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CSK6_CLAM3
PLM1_30_b1_sep16_scaffold_271_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5837..6457)
DNA (621bp) protein (207aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Imidazole glycerol phosphate synthase subunit HisH Tax=Frankia sp. (strain EuI1c) RepID=E3J329_FRASU
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
PLM1_30_b1_sep16_scaffold_271_8
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6454..7071)
DNA (618bp) protein (206aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000255|HAMAP-Rule:MF_00076}; Short=IGPD {ECO:0000255|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000255|HAMAP-Rule:MF_00076};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
Imidazoleglycerol-phosphate dehydratase Tax=Frankia sp. (strain CcI3) RepID=HIS7_FRASC
PLM1_30_b1_sep16_scaffold_271_9
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(7068..8156)
DNA (1089bp) protein (363aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Histidinol-phosphate aminotransferase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VXC6_9ACTO
PLM1_30_b1_sep16_scaffold_271_10
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8153..9343)
DNA (1191bp) protein (397aa)
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
Histidinol dehydrogenase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B276_FRADG
PLM1_30_b1_sep16_scaffold_271_11
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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9575..10216
DNA (642bp) protein (214aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00037DB735
peptidase S16 lon domain-containing protein
Peptidase S16 lon domain protein {ECO:0000313|EMBL:ACY98443.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_30_b1_sep16_scaffold_271_12
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10218..11258
DNA (1041bp) protein (347aa)
HhH-GPD family protein Tax=Frankia sp. (strain EuI1c) RepID=E3IU15_FRASU
Uncharacterized protein {ECO:0000313|EMBL:ETX00676.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
HhH-GPD family protein
PLM1_30_b1_sep16_scaffold_271_13
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11206..11859)
DNA (654bp) protein (218aa)
RhtB family transporter Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AQF3_STRRD
RhtB family transporter
RhtB family transporter {ECO:0000313|EMBL:ACZ84497.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_30_b1_sep16_scaffold_271_14
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11852..12946)
DNA (1095bp) protein (365aa)
Alcohol dehydrogenase Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6JQ49_STRRC
adhA10; alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:EST21226.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
PLM1_30_b1_sep16_scaffold_271_15
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13002..17597)
DNA (4596bp) protein (1532aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
DNA polymerase III, alpha subunit Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LTR7_ACIC1
PLM1_30_b1_sep16_scaffold_271_16
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(17824..18741)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Pseudouridine synthase Tax=Firmicutes bacterium CAG:176 RepID=R6DAN2_9FIRM
RluA family pseudouridine synthase
PLM1_30_b1_sep16_scaffold_271_17
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18738..19259)
DNA (522bp) protein (174aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase Tax=Frankia sp. QA3 RepID=I9KGD8_9ACTO
PLM1_30_b1_sep16_scaffold_271_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(19262..19702)
DNA (441bp) protein (147aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI0003828BE6
TraR/DksA family transcriptional regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_30_b1_sep16_scaffold_271_19
Streptomyces filamentosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20091..20918)
DNA (828bp) protein (276aa)
DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036F6822
DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EWS93510.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseosporus NRRL 11379.;"
PLM1_30_b1_sep16_scaffold_271_20
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20952..21269)
DNA (318bp) protein (106aa)
Transposase Tax=Saccharomonospora azurea NA-128 RepID=H8G744_9PSEU
Transposase {ECO:0000313|EMBL:EHY87313.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea NA-128.;"
transposase IS891/IS1136/IS1341 family
PLM1_30_b1_sep16_scaffold_271_21
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21443..21880
DNA (438bp) protein (146aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
isoleucyl-tRNA synthase Tax=Actinomadura atramentaria RepID=UPI00037AAA30
isoleucyl-tRNA synthetase
Displaying 21 items

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