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PLM1_60_b1_redo_sep16_scaffold_39

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_39_1
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(3..314)
DNA (312bp) protein (104aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037F8C2E
hypothetical protein
Tax=RBG_16_Chloroflexi_56_8_curated
PLM1_60_b1_redo_sep16_scaffold_39_2
unknown

Not on your lists

891..1127
DNA (237bp) protein (79aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_3
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1231..1443)
DNA (213bp) protein (71aa)
DNA-binding protein Tax=Actinopolymorpha alba RepID=UPI000365D564
excisionase family DNA binding domain-containing protein
DNA-binding protein {ECO:0000313|EMBL:EWT00941.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
PLM1_60_b1_redo_sep16_scaffold_39_4
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1617..2444)
DNA (828bp) protein (276aa)
Uncharacterized protein Tax=Streptomyces albulus CCRC 11814 RepID=S0H0F2_STRA9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIA04491.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus.;"
PLM1_60_b1_redo_sep16_scaffold_39_5
unknown

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comp(2920..3213)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_6
unknown

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comp(3451..3873)
DNA (423bp) protein (141aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_7
unknown

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3994..4158
DNA (165bp) protein (55aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_8
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4231..4461
DNA (231bp) protein (77aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI00036E2FA1
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR64268.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_39_9
unknown

Not on your lists

4485..4619
DNA (135bp) protein (45aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_10
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4774..4974
DNA (201bp) protein (67aa)
Uncharacterized protein Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPS9_THIA3
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EJZ35267.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein; Putative DNA-binding domain
PLM1_60_b1_redo_sep16_scaffold_39_11
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5220..6296
DNA (1077bp) protein (359aa)
leucine dehydrogenase Tax=Alicyclobacillus pohliae RepID=UPI0003648468
Leucine dehydrogenase {ECO:0000313|EMBL:KEO82356.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
Glutamate dehydrogenase/leucine dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_39_12
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6486..7328)
DNA (843bp) protein (281aa)
Uncharacterized protein Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PWA3_KRIFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB31555.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_60_b1_redo_sep16_scaffold_39_13
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7475..8719
DNA (1245bp) protein (415aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
Glycoside hydrolase family 3 domain protein Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H4M9_CELFA
glycoside hydrolase family 3 domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_39_14
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8935..10002)
DNA (1068bp) protein (356aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWN3_ACIC1
PLM1_60_b1_redo_sep16_scaffold_39_15
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9999..11519)
DNA (1521bp) protein (507aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Amidophosphoribosyltransferase Tax=Modestobacter marinus (strain BC501) RepID=I4F4E2_MODMB
PLM1_60_b1_redo_sep16_scaffold_39_16
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11946..12515
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BCG3_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ89992.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_39_17
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12938..15568
DNA (2631bp) protein (877aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RHI7_FRAAA
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_39_18
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15572..15994
DNA (423bp) protein (141aa)
Roadblock/LC7 family protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QFA9_CATAD
Roadblock/LC7 family protein
Roadblock/LC7 family protein {ECO:0000313|EMBL:ACU76686.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM1_60_b1_redo_sep16_scaffold_39_19
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16010..16378
DNA (369bp) protein (123aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AUX5_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH11178.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_60_b1_redo_sep16_scaffold_39_20
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16359..16973
DNA (615bp) protein (205aa)
Putative uncharacterized protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QFB1_CATAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU76688.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM1_60_b1_redo_sep16_scaffold_39_21
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(17001..18644)
DNA (1644bp) protein (548aa)
LVIVD repeat-containing protein bin=GWC2_Syntrophus__56_31 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_60_b1_redo_sep16_scaffold_39_22
RHI_Saccharibacteria_49_19, Candidatus Saccharibacteria, Bacteria

Not on your lists

19001..19648
DNA (648bp) protein (216aa)
Uncharacterized protein bin=GWC2_TM7_44_17 species=Turicella otitidis genus=Turicella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_49_19_curated
PLM1_60_b1_redo_sep16_scaffold_39_23
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19823..22345)
DNA (2523bp) protein (841aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 Tax=Frankia sp. EUN1f RepID=D3D4T1_9ACTO
PLM1_60_b1_redo_sep16_scaffold_39_24
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22514..23194)
DNA (681bp) protein (227aa)
phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
Phosphoribosylformylglycinamidine synthase 1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LCI6_FRASN
PLM1_60_b1_redo_sep16_scaffold_39_25
unknown

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comp(23191..23541)
DNA (351bp) protein (117aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_26
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23553..24431)
DNA (879bp) protein (293aa)
Penicillin-binding protein, beta-lactamase class C Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BHX5_SANKS
penicillin-binding protein
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:ACZ22045.1}; species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
PLM1_60_b1_redo_sep16_scaffold_39_27
unknown

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comp(24514..25311)
DNA (798bp) protein (266aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_39_28
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25318..25557)
DNA (240bp) protein (80aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
Phosphoribosylformylglycinamidine synthase, purS protein Tax=Streptomyces sp. HPH0547 RepID=S3AX43_9ACTO
phosphoribosylformylglycinamidine synthase subunit PurS
PLM1_60_b1_redo_sep16_scaffold_39_29
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25617..25841)
DNA (225bp) protein (75aa)
Carbon storage regulator homolog Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WB04_9ACTO
csrA; putative CsrA-like regulator
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM1_60_b1_redo_sep16_scaffold_39_30
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26216..27055
DNA (840bp) protein (280aa)
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWJ4_ACIC1
RNA polymerase subunit sigma 28
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG {ECO:0000313|EMBL:ABK53804.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
Displaying items 1-30 of 86 in total

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