ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_6795

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6795_1
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

comp(2..781)
-----------------
DNA (780bp)
protein (260aa)
Uncharacterized protein Tax=Magnetospirillum sp. SO-1 RepID=M3AAZ6_9PROT
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
PLM4_65_b1_redo_sep16_scaffold_6795_2
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

940..1398
-----------------
DNA (459bp)
protein (153aa)
Uncharacterized protein Tax=Paenibacillus RepID=F5LMR1_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EGL16325.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF7.;"
thiol-disulfide oxidoreductase DCC
PLM4_65_b1_redo_sep16_scaffold_6795_3
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(1383..1547)
-----------------
DNA (165bp)
protein (55aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_65_b1_redo_sep16_scaffold_6795_4
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(1573..3423)
-----------------
DNA (1851bp)
protein (617aa)
Putative carbamoyl transferase bin=GWF2_Lentisphaerae_57_35 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
putative carbamoyl transferase, NodU family
Tax=GWF2_Lentisphaerae_57_35_curated
PLM4_65_b1_redo_sep16_scaffold_6795_5
GWA2_WOR_2_53_43_curated, WOR-2, Bacteria

Not on your lists

comp(3436..3942)
-----------------
DNA (507bp)
protein (169aa)
Putative uncharacterized protein bin=GWA2_OP3_53_43 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Tax=GWA2_WOR_2_53_43_curated
PLM4_65_b1_redo_sep16_scaffold_6795_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

4049..5197
-----------------
DNA (1149bp)
protein (383aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_6795_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(5194..6219)
-----------------
DNA (1026bp)
protein (342aa)
glucokinase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
glucokinase
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_6795_8
unknown

Not on your lists

comp(6216..6389)
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6795_9
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6497..7333
-----------------
DNA (837bp)
protein (279aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-133-G06 RepID=UPI000378EDFF
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_b1_redo_sep16_scaffold_6795_10
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7439..7780
-----------------
DNA (342bp)
protein (114aa)
Glucose-6-phosphate 1-dehydrogenase Tax=Sulfuricella denitrificans skB26 RepID=S6AJ27_9PROT
glucose-6-phosphate 1-dehydrogenase
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_65_b1_redo_sep16_scaffold_6795_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7813..8316
-----------------
DNA (504bp)
protein (168aa)
Uncharacterized protein (Fragment) Tax=mine drainage metagenome RepID=T1B175_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_6795_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8319..8846
-----------------
DNA (528bp)
protein (176aa)
Uncharacterized protein Tax=Coxiella burnetii (strain Dugway 5J108-111) RepID=A9KEZ3_COXBN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_6795_13
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(8923..10122)
-----------------
DNA (1200bp)
protein (400aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00036A2F8F
ATPase AAA
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_b1_redo_sep16_scaffold_6795_14
unknown

Not on your lists

10379..10573
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6795_15
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(10528..13302)
-----------------
DNA (2775bp)
protein (925aa)
Predicted metal-dependent amidohydrolase with the TIM-barrel fold bin=GWA2_Ignavibacteria_55_11 species=Idiomarina loihiensis genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
putative metal-dependent hydrolase
Tax=CG_Anaero_04
PLM4_65_b1_redo_sep16_scaffold_6795_16
unknown

Not on your lists

comp(13456..14871)
-----------------
DNA (1416bp)
protein (472aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6795_17

Not on your lists

15010..15633
-----------------
DNA (624bp)
protein (208aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000361D2B0
Marine sediment metagenome DNA, contig: S01H1_L07814 {ECO:0000313|EMBL:GAF77468.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM4_65_b1_redo_sep16_scaffold_6795_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15630..16607
-----------------
DNA (978bp)
protein (326aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000376EFAE
Serine/threonine protein kinase {ECO:0000313|EMBL:EHR68968.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
protein kinase
Displaying 18 items

View Taxonomy