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PLM4_65_b1_sep16_Acidobacteria_Holophagae_54_7

PLM4_65cm_b1_redo_sep2016_Bacteria_54_7
In projects: PLM4_65cm_b1_redo_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  Acidobacteria_All

Consensus taxonomy: Bacteria

Displaying items 351-400 of 611 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_65_b1_redo_sep16_scaffold_3460
Domain: Bacteria (85.71%)
14 17033 bp 54.38 7.38 87.11
PLM4_65_b1_redo_sep16_scaffold_6057
Species: Pyrinomonas methylaliphatogenes (50%)
14 12728 bp 54.06 7.38 86.05
PLM4_65_b1_redo_sep16_scaffold_82687
Domain: Bacteria (60%)
5 3028 bp 50.59 7.38 79.06
PLM4_65_b1_redo_sep16_scaffold_55043
Species: Pyrinomonas methylaliphatogenes (80%)
5 3841 bp 52.95 7.38 87.40
PLM4_65_b1_redo_sep16_scaffold_2219
Species: Pyrinomonas methylaliphatogenes (68.75%)
16 21344 bp 53.69 7.38 89.38
PLM4_65_b1_redo_sep16_scaffold_39994
Domain: Bacteria (66.67%)
6 4623 bp 56.67 7.40 83.65
PLM4_65_b1_redo_sep16_scaffold_9151
Phylum: Acidobacteria (50%)
8 10300 bp 54.00 7.40 82.22
PLM4_65_b1_redo_sep16_scaffold_15706
Phylum: Proteobacteria (62.5%)
8 7722 bp 54.74 7.40 94.64
PLM4_65_b1_redo_sep16_scaffold_38868
Species: Pyrinomonas methylaliphatogenes (100%)
6 4698 bp 54.43 7.41 78.54
PLM4_65_b1_redo_sep16_scaffold_18483
Species: Pyrinomonas methylaliphatogenes (60%)
5 7072 bp 54.51 7.42 89.34
PLM4_65_b1_redo_sep16_scaffold_40526
Domain: Bacteria (100%)
3 4585 bp 53.89 7.43 64.84
PLM4_65_b1_redo_sep16_scaffold_43225
Species: Pyrinomonas methylaliphatogenes (100%)
3 4422 bp 54.57 7.43 90.77
PLM4_65_b1_redo_sep16_scaffold_10655
Species: Pyrinomonas methylaliphatogenes (55.56%)
9 9512 bp 54.86 7.44 82.16
PLM4_65_b1_redo_sep16_scaffold_27099
Domain: Bacteria (80%)
5 5728 bp 58.59 7.44 86.44
PLM4_65_b1_redo_sep16_scaffold_12031
Species: uncultured bacterium (54.55%)
11 8903 bp 53.75 7.45 93.00
PLM4_65_b1_redo_sep16_scaffold_38062
Species: Ktedonobacter racemifer (60%)
5 4753 bp 55.17 7.45 70.82
PLM4_65_b1_redo_sep16_scaffold_4463
Species: Pyrinomonas methylaliphatogenes (76.47%)
17 14923 bp 52.39 7.45 84.96
PLM4_65_b1_redo_sep16_scaffold_11467
Domain: Bacteria (71.43%)
7 9130 bp 54.82 7.46 82.28
PLM4_65_b1_redo_sep16_scaffold_20032
Species: BJP_IG2069_Desfulfarculales_53_13 (50%)
6 6760 bp 54.33 7.46 88.40
PLM4_65_b1_redo_sep16_scaffold_14994
Domain: Bacteria (77.78%)
9 7925 bp 53.45 7.46 95.81
PLM4_65_b1_redo_sep16_scaffold_47694
Domain: Bacteria (50%)
4 4178 bp 55.34 7.47 70.73
PLM4_65_b1_redo_sep16_scaffold_7642
Domain: Bacteria (70%)
10 11280 bp 53.81 7.47 78.40
PLM4_65_b1_redo_sep16_scaffold_4155
Domain: Bacteria (76.92%)
13 15469 bp 54.89 7.47 90.61
PLM4_65_b1_redo_sep16_scaffold_48212
Domain: Bacteria (55.56%)
9 7300 bp 52.85 7.48 88.97
PLM4_65_b1_redo_sep16_scaffold_1417
Species: Pyrinomonas methylaliphatogenes (68.97%)
29 28525 bp 53.15 7.48 85.09
PLM4_65_b1_redo_sep16_scaffold_2162
Domain: Bacteria (66.67%)
21 21584 bp 54.10 7.48 79.16
PLM4_65_b1_redo_sep16_scaffold_8228
Species: Pyrinomonas methylaliphatogenes (75%)
12 10874 bp 53.72 7.49 80.45
PLM4_65_b1_redo_sep16_scaffold_34399
Species: Pyrinomonas methylaliphatogenes (100%)
7 7909 bp 50.78 7.49 82.99
PLM4_65_b1_redo_sep16_scaffold_181930
Species: Pyrinomonas methylaliphatogenes (66.67%)
6 2583 bp 53.62 7.49 93.50
PLM4_65_b1_redo_sep16_scaffold_22128
Domain: Bacteria (100%)
7 11658 bp 54.52 7.49 83.99
PLM4_65_b1_redo_sep16_scaffold_23133 7 6251 bp 53.69 7.49 85.51
PLM4_65_b1_redo_sep16_scaffold_7243
Domain: Bacteria (100%)
12 11583 bp 54.28 7.50 90.03
PLM4_65_b1_redo_sep16_scaffold_8419
Phylum: Acidobacteria (50%)
12 10741 bp 54.59 7.50 87.42
PLM4_65_b1_redo_sep16_scaffold_112586
Species: R_Acidobacteria_60_20 (50%)
2 2517 bp 55.42 7.51 92.61
PLM4_65_b1_redo_sep16_scaffold_3978
Species: Pyrinomonas methylaliphatogenes (77.78%)
18 15805 bp 53.87 7.51 85.91
PLM4_65_b1_redo_sep16_scaffold_83305
Domain: Bacteria (71.43%)
7 3015 bp 50.95 7.51 86.37
PLM4_65_b1_redo_sep16_scaffold_11434
Domain: Bacteria (75%)
12 9145 bp 51.09 7.51 70.85
PLM4_65_b1_redo_sep16_scaffold_7133
Domain: Bacteria (83.33%)
6 11685 bp 50.00 7.52 92.35
PLM4_65_b1_redo_sep16_scaffold_9337
Domain: Bacteria (81.82%)
11 12881 bp 53.93 7.52 83.59
PLM4_65_b1_redo_sep16_scaffold_6414
Order: Nostocales (50%)
6 17529 bp 60.63 7.52 99.25
PLM4_65_b1_redo_sep16_scaffold_14978
Species: Pyrinomonas methylaliphatogenes (100%)
5 7928 bp 54.26 7.53 90.44
PLM4_65_b1_redo_sep16_scaffold_100841
Species: Pyrinomonas methylaliphatogenes (66.67%)
3 2691 bp 55.74 7.53 98.33
PLM4_65_b1_redo_sep16_scaffold_87530
Species: Pyrinomonas methylaliphatogenes (100%)
4 2928 bp 53.11 7.53 76.43
PLM4_65_b1_redo_sep16_scaffold_16570
Species: Pyrinomonas methylaliphatogenes (52.94%)
17 19807 bp 54.30 7.54 83.30
PLM4_65_b1_redo_sep16_scaffold_64495
Domain: Bacteria (100%)
5 3503 bp 51.93 7.54 62.86
PLM4_65_b1_redo_sep16_scaffold_560
Species: Pyrinomonas methylaliphatogenes (58.82%)
34 39687 bp 54.35 7.54 87.40
PLM4_65_b1_redo_sep16_scaffold_2802
Phylum: Acidobacteria (50%)
20 18937 bp 54.36 7.55 86.70
PLM4_65_b1_redo_sep16_scaffold_19768
Species: Pyrinomonas methylaliphatogenes (75%)
4 6813 bp 51.84 7.55 94.14
PLM4_65_b1_redo_sep16_scaffold_6432
Species: Pyrinomonas methylaliphatogenes (57.14%)
14 18169 bp 54.22 7.55 85.73
PLM4_65_b1_redo_sep16_scaffold_4152
Species: Pyrinomonas methylaliphatogenes (57.14%)
14 16944 bp 54.30 7.56 89.27
Displaying items 351-400 of 611 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.