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PLM1_60_b1_redo_sep16_scaffold_2568

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2568_1
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..397)
DNA (396bp) protein (132aa)
UPI0003D05A2A related cluster Tax=unknown RepID=UPI0003D05A2A
Transposase for insertion sequence {ECO:0000313|EMBL:CQD24047.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
recombinase
PLM1_60_b1_redo_sep16_scaffold_2568_2
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(504..854)
DNA (351bp) protein (117aa)
Uncharacterized protein Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JY30_BURP8
Uncharacterized protein {ECO:0000313|EMBL:CQD24049.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2568_3
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(1147..1545)
DNA (399bp) protein (133aa)
RNA-directed DNA polymerase (EC:2.7.7.49)
RNA-directed DNA polymerase {ECO:0000313|EMBL:ABP56568.1}; EC=2.7.7.49 {ECO:0000313|EMBL:ABP56568.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
RNA-directed DNA polymerase Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4XCB1_SALTO
PLM1_60_b1_redo_sep16_scaffold_2568_4
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2013..2681)
DNA (669bp) protein (223aa)
Putative transposase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B4R2_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH98631.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_2568_5
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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2830..3510
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2Q2P9_KRIFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB30230.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_60_b1_redo_sep16_scaffold_2568_6
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3712..4137)
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6W850_ACTMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU37071.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM1_60_b1_redo_sep16_scaffold_2568_7
unknown

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4167..4346
DNA (180bp) protein (60aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2568_8
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4325..4795)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6W850_ACTMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU37071.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM1_60_b1_redo_sep16_scaffold_2568_9
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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4932..6857
DNA (1926bp) protein (642aa)
Transcriptional regulator, LuxR family Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A6G3_THECD
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACY96438.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_2568_10
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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6806..7933
DNA (1128bp) protein (376aa)
Transcriptional regulator, LuxR family Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A6G3_THECD
Uncharacterized protein {ECO:0000313|EMBL:KIZ17216.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
LuxR family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_2568_11
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8134..9732)
DNA (1599bp) protein (533aa)
acetyl-CoA carboxylase Tax=Nocardiopsis synnemataformans RepID=UPI0003466890
Acetyl-CoA carboxyl transferase {ECO:0000313|EMBL:KIH99189.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
carboxyl transferase
PLM1_60_b1_redo_sep16_scaffold_2568_12
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(9729..10937)
DNA (1209bp) protein (403aa)
L-carnitine dehydratase/bile acid-inducible Tax=Nocardioides sp. CF8 RepID=R7Y2B0_9ACTO
L-carnitine dehydratase/bile acid-inducible {ECO:0000313|EMBL:EON25716.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
formyl-CoA transferase
PLM1_60_b1_redo_sep16_scaffold_2568_13
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10969..11448)
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B2W2_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ83589.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_2568_14
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11456..12853)
DNA (1398bp) protein (466aa)
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:ACZ83583.1}; EC=3.5.1.4 {ECO:0000313|EMBL:ACZ83583.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
Amidase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B2V6_STRRD
PLM1_60_b1_redo_sep16_scaffold_2568_15
Rhodococcus sp. BCP1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13626..14033
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Rhodococcus sp. EsD8 RepID=N1MEP6_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:KDE14746.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. BCP1.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2568_16
Saccharomonospora xinjiangensis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14072..15217
DNA (1146bp) protein (382aa)
Putative RNA polymerase sigma factor containing a TPR repeat domain Tax=Saccharomonospora xinjiangensis XJ-54 RepID=I0V8B6_9PSEU
Putative RNA polymerase sigma factor containing a TPR repeat domain {ECO:0000313|EMBL:EID56369.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora xinjiangensis XJ-54.;"
Uncharacterized protein
Displaying 16 items

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