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PLM3_127_b2_sep16_scaffold_736

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_736_1
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(357..623)
DNA (267bp) protein (89aa)
Rhs family protein Tax=Chthonomonas calidirosea T49 RepID=S0EXK5_9BACT
Rhs family protein
Rhs family protein {ECO:0000313|EMBL:CCW36636.1}; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
PLM3_127_b2_sep16_scaffold_736_2
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(783..1463)
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XL75_MICPN
Uncharacterized protein {ECO:0000313|EMBL:KHD79053.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_736_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(1888..2403)
DNA (516bp) protein (172aa)
Lysine exporter protein (LYSE/YGGA) Tax=Mesorhizobium sp. STM 4661 RepID=M5FJP4_9RHIZ
lysine exporter protein LysE/YggA
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_127_b2_sep16_scaffold_736_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

2751..3116
DNA (366bp) protein (122aa)
NADH-ubiquinone oxidoreductase subunit 3 Tax=Streptomyces sp. CNT372 RepID=UPI000382D083
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_5
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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3107..3634
DNA (528bp) protein (176aa)
NADH-quinone oxidoreductase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
NADH-quinone oxidoreductase subunit B Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y3L8_THEBD
PLM3_127_b2_sep16_scaffold_736_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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3688..4161
DNA (474bp) protein (158aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MUE1_9ACTO
NADH dehydrogenase (ubiquinone) 30 kDa subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_7
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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4166..5374
DNA (1209bp) protein (403aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
NADH-quinone oxidoreductase subunit D Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PY82_KRIFD
PLM3_127_b2_sep16_scaffold_736_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

5371..6360
DNA (990bp) protein (330aa)
NADH dehydrogenase (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit H Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y3M0_THEBD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_9
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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6369..7493
DNA (1125bp) protein (375aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI0003687B4F
formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)-like protein
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (Chain I)-like protein {ECO:0000313|EMBL:ACZ83692.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_127_b2_sep16_scaffold_736_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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7490..7984
DNA (495bp) protein (165aa)
NADH dehydrogenase Tax=Streptomyces sp. PsTaAH-124 RepID=UPI00035EAA17
NADH-ubiquinone oxidoreductase protein, chain J
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_11
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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8005..8310
DNA (306bp) protein (102aa)
NADH-quinone oxidoreductase subunit K Tax=Candidatus Actinomarina minuta RepID=S5DLC9_9ACTN
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)-like protein
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_127_b2_sep16_scaffold_736_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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8339..10246
DNA (1908bp) protein (636aa)
nuoL; proton-translocating NAD(P)H-quinone oxidoreductase, chain L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
proton-translocating NADH-quinone oxidoreductase subunit L
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM3_127_b2_sep16_scaffold_736_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

10293..11831
DNA (1539bp) protein (513aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH:ubiquinone oxidoreductase subunit 4 (Chain M) Tax=Candidatus Actinomarina minuta RepID=S5DLF0_9ACTN
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

11841..13313
DNA (1473bp) protein (491aa)
nuoN; NADH-quinone oxidoreductase subunit N (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit N Tax=Ilumatobacter coccineus YM16-304 RepID=M5A608_9ACTN
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_15
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

13348..13560
DNA (213bp) protein (71aa)
Antitoxin VapB11 Tax=Mycobacterium tuberculosis complex RepID=VPB11_MYCTU
hypothetical protein
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_127_b2_sep16_scaffold_736_16
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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13557..14006
DNA (450bp) protein (150aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Ribonuclease VapC Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SDD2_GEOOG
PilT protein domain-containing protein
PLM3_127_b2_sep16_scaffold_736_17
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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14362..15021
DNA (660bp) protein (220aa)
PglZ domain protein Tax=Opitutaceae bacterium TAV5 RepID=H1IMN0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94666.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
PLM3_127_b2_sep16_scaffold_736_18
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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15029..15340
DNA (312bp) protein (104aa)
Putative uncharacterized protein Tax=Opitutaceae bacterium TAV5 RepID=H1IMM9_9BACT
ATP-dependent Lon protease
ATP-dependent Lon protease {ECO:0000313|EMBL:AHF92700.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
PLM3_127_b2_sep16_scaffold_736_19
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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15340..16626
DNA (1287bp) protein (429aa)
Putative uncharacterized protein Tax=Opitutaceae bacterium TAV5 RepID=H1IMM9_9BACT
ATP-dependent Lon protease
Uncharacterized protein {ECO:0000313|EMBL:EJG07272.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" source="Methanofollis liminatans DSM 4140.;"
PLM3_127_b2_sep16_scaffold_736_20
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16960..17820
DNA (861bp) protein (287aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
Protease HtpX homolog Tax=Micromonospora lupini str. Lupac 08 RepID=I0LCA4_9ACTO
peptidase m48 ste24p
PLM3_127_b2_sep16_scaffold_736_21
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17860..19137)
DNA (1278bp) protein (426aa)
Putative amino acid transporter Tax=Gordonia amicalis NBRC 100051 = JCM 11271 RepID=L7L2G7_9ACTO
Transporter {ECO:0000313|EMBL:KDS87304.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
transporter
PLM3_127_b2_sep16_scaffold_736_22
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19188..20432)
DNA (1245bp) protein (415aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FDR8_VERMA
putative ECF subfamily RNA polymerase sigma-24 factor
Putative RNA polymerase, sigma-24 subunit, ECF subfamily protein {ECO:0000313|EMBL:AEB43599.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM3_127_b2_sep16_scaffold_736_23
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20429..20791)
DNA (363bp) protein (121aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI00036C0EB4
DGPFAETKE family protein
DGPFAETKE family protein {ECO:0000313|EMBL:ABV96867.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM3_127_b2_sep16_scaffold_736_24
Streptomyces sp. NTK 937, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20927..23386)
DNA (2460bp) protein (820aa)
glnD; PII uridylyl-transferase (EC:2.7.7.59)
PII uridylyl-transferase Tax=Streptomyces viridosporus RepID=UPI0002FBCB62
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NTK 937.;"
PLM3_127_b2_sep16_scaffold_736_25
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(23376..23714)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 Tax=Frankia sp. BMG5.12 RepID=UPI00036455E9
nitrogen regulatory protein P-II
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_736_26
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

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comp(23711..25039)
DNA (1329bp) protein (443aa)
Ammonium transport protein (Amt family) bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
ammonium transporter
Tax=CG_Solirubrobact_01
PLM3_127_b2_sep16_scaffold_736_27
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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25212..25775
DNA (564bp) protein (188aa)
GCN5-related N-acetyltransferase Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BAQ0_MEISD
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADH62572.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
PLM3_127_b2_sep16_scaffold_736_28
unknown

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comp(25898..26029)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_736_29
unknown

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comp(26239..26457)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_736_trna_1
unknown

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26294..26375
DNA (82bp)
transferRNA Tyr
Displaying 30 items

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