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PLM3_60_coex_sep16_scaffold_489

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_489_1
Aeropyrum camini, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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1..333
DNA (333bp) protein (111aa)
ABC-type antimicrobial peptide transporter ATP-binding protein Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TDK2_9CREN
ABC-type antimicrobial peptide transporter ATP-binding protein
ABC-type antimicrobial peptide transporter ATP-binding protein {ECO:0000313|EMBL:BAN90053.1}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum camini SY1 = JCM 12091.;"
PLM3_60_coex_sep16_scaffold_489_2
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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317..1516
DNA (1200bp) protein (400aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AYL7_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH11586.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_60_coex_sep16_scaffold_489_3
unknown

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1613..2497
DNA (885bp) protein (295aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_489_4
unknown

Not on your lists

comp(2665..3360)
DNA (696bp) protein (232aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_489_5
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

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comp(3357..5270)
DNA (1914bp) protein (638aa)
Twin-arginine translocation pathway signal Tax=Frankia sp. (strain CcI3) RepID=Q2JF04_FRASC
twin-arginine translocation pathway signal
Tax=CG_Solirubrobact_01
PLM3_60_coex_sep16_scaffold_489_6
unknown

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comp(5267..5485)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_489_7
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(5482..6903)
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
Periplasmic sensor signal transduction histidine kinase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RIF2_MOOTA
sensor signal transduction histidine kinase
PLM3_60_coex_sep16_scaffold_489_8
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6908..7579)
DNA (672bp) protein (224aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI00037F6E34
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD11768.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM3_60_coex_sep16_scaffold_489_9
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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7725..9440
DNA (1716bp) protein (572aa)
Putative uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SG90_ACTS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV84206.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
PLM3_60_coex_sep16_scaffold_489_10
Streptomyces sp. RSD-27, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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9798..10607
DNA (810bp) protein (270aa)
Predicted protein Tax=Streptomyces sp. C RepID=D9VVZ2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KIF07153.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. RSD-27.;"
PLM3_60_coex_sep16_scaffold_489_11
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10671..11147)
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Amycolatopsis mediterranei RepID=G0FVZ9_AMYMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK43936.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM3_60_coex_sep16_scaffold_489_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(11509..12429)
DNA (921bp) protein (307aa)
Dyp-type peroxidase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVF2_KORVE
Dyp-type peroxidase
Dyp-type peroxidase {ECO:0000313|EMBL:ABF39148.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3_60_coex_sep16_scaffold_489_13

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comp(12464..13072)
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6PQP2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH97247.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
deaminase-reductase domain-containing protein
PLM3_60_coex_sep16_scaffold_489_14
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13112..13804)
DNA (693bp) protein (231aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B4R9_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ85605.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_489_15
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13910..15154)
DNA (1245bp) protein (415aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036C951D
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:EMD29718.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
putative ECF subfamily RNA polymerase sigma-24 subunit
PLM3_60_coex_sep16_scaffold_489_16
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(15163..15579)
DNA (417bp) protein (139aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000382EFDB
YCII-like protein
Uncharacterized protein {ECO:0000313|EMBL:EXG81892.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM3_60_coex_sep16_scaffold_489_17
Deinococcus deserti, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(16364..17131)
DNA (768bp) protein (256aa)
Putative Peptidase S1 and S6, chymotrypsin Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1CZT6_DEIDV
peptidase S1 and S6, chymotrypsin
Putative Peptidase S1 and S6, chymotrypsin {ECO:0000313|EMBL:ACO45188.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923).;"
PLM3_60_coex_sep16_scaffold_489_18
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(17175..17957)
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEC4_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ41280.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM3_60_coex_sep16_scaffold_489_19
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

18134..18598
DNA (465bp) protein (155aa)
Putative uncharacterized protein Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HJE1_STRPR
hypothetical protein
Tax=RBG_16_Actinobacteria_67_15_curated
PLM3_60_coex_sep16_scaffold_489_20
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19084..20931)
DNA (1848bp) protein (616aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036B301A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWM67604.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
ABC transporter ATPase
PLM3_60_coex_sep16_scaffold_489_21
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(20928..22514)
DNA (1587bp) protein (529aa)
ABC transporter ATP-binding protein Tax=Patulibacter medicamentivorans RepID=H0E9F2_9ACTN
ABC transporter
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_60_coex_sep16_scaffold_489_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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22878..23546
DNA (669bp) protein (223aa)
All4737 protein bin=GWC2_Methylomirabilis_70_16 species=Anabaena cylindrica genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pyridoxamine 5'-phosphate oxidase family protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_489_23
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23710..24423)
DNA (714bp) protein (238aa)
hypothetical protein Tax=Nocardiopsis valliformis RepID=UPI00036AE073
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEA29058.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_489_24
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24510..24995)
DNA (486bp) protein (162aa)
hypothetical protein Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE8BF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA29057.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_489_25
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(24988..25161)
DNA (174bp) protein (58aa)
Uncharacterized protein Tax=Frankia sp. (strain EuI1c) RepID=E3J7B2_FRASU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP78385.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_489_26
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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25458..26318
DNA (861bp) protein (287aa)
Protein RecA Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1IJL3_9PSEU
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
recA protein
PLM3_60_coex_sep16_scaffold_489_27
unknown

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26439..26636
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_489_28
unknown

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26633..26956
DNA (324bp) protein (108aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_489_29
Streptomyces coelicolor, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(27128..27547)
DNA (420bp) protein (140aa)
Putative transposase Tax=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) RepID=O69923_STRCO
SC3C8.11c; transposase
Putative transposase {ECO:0000313|EMBL:CAA19603.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group.;" source="Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).;"
PLM3_60_coex_sep16_scaffold_489_30
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

28371..28868
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ87_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH81877.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
integral membrane sensor signal transduction histidine kinase
Displaying items 1-30 of 36 in total

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