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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_16693
Species: Rhodovulum sp. PH10 (60%)
5 3557 bp 68.60 8.05 87.21
PLM3_30_b1_sep16_scaffold_16575
Phylum: Proteobacteria (50%)
4 3572 bp 65.76 8.06 80.96
PLM3_30_b1_sep16_scaffold_16089
Phylum: Proteobacteria (80%)
5 3629 bp 64.26 8.06 94.32
PLM3_30_b1_sep16_scaffold_9261
Order: Rhizobiales (55.56%)
9 10702 bp 66.53 8.07 84.63
PLM3_30_b1_sep16_scaffold_22316
Order: Rhizobiales (100%)
6 4422 bp 66.19 8.07 93.22
PLM3_30_b1_sep16_scaffold_24573
Order: Rhizobiales (100%)
5 4239 bp 64.10 8.07 93.42
PLM3_30_b1_sep16_scaffold_5249
Order: Rhizobiales (75%)
12 9690 bp 67.06 8.07 91.36
PLM3_30_b1_sep16_scaffold_14642
Order: Rhizobiales (50%)
6 5219 bp 68.84 8.08 83.58
PLM3_30_b1_sep16_scaffold_7368
Class: Alphaproteobacteria (80%)
5 5531 bp 65.94 8.08 85.10
PLM3_30_b1_sep16_scaffold_6532
Order: Rhizobiales (50%)
8 8852 bp 67.89 8.08 80.96
PLM3_30_b1_sep16_scaffold_17818
Order: Rhizobiales (66.67%)
3 3430 bp 66.38 8.09 92.89
PLM3_30_b1_sep16_scaffold_23671
Species: Rhodovulum sp. PH10 (50%)
4 2929 bp 67.43 8.09 89.62
PLM3_30_b1_sep16_scaffold_37770
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 3190 bp 67.68 8.09 95.17
PLM3_30_b1_sep16_scaffold_15765
Class: Alphaproteobacteria (60%)
5 3671 bp 64.97 8.09 85.56
PLM3_30_b1_sep16_scaffold_3000
Class: Alphaproteobacteria (50%)
10 8589 bp 64.37 8.09 90.31
PLM3_30_b1_sep16_scaffold_19950
Genus: Bradyrhizobium (66.67%)
3 3221 bp 62.53 8.10 92.67
PLM3_30_b1_sep16_scaffold_3472
Class: Alphaproteobacteria (66.67%)
12 11671 bp 67.37 8.10 92.92
PLM3_30_b1_sep16_scaffold_8868
Order: Rhizobiales (66.67%)
6 5040 bp 66.27 8.10 92.80
PLM3_30_b1_sep16_scaffold_2251
Order: Rhizobiales (64.71%)
17 15758 bp 65.19 8.11 89.69
PLM3_30_b1_sep16_scaffold_45056
Domain: Bacteria (66.67%)
3 2924 bp 66.31 8.11 102.50
PLM3_30_b1_sep16_scaffold_5863
Order: Rhizobiales (50%)
8 8313 bp 65.51 8.12 84.59
PLM3_30_b1_sep16_scaffold_15703
Species: Rhodovulum sp. PH10 (50%)
6 5673 bp 64.69 8.12 91.12
PLM3_30_b1_sep16_scaffold_12742
Genus: Bradyrhizobium (60%)
5 4139 bp 66.51 8.12 85.67
PLM3_30_b1_sep16_scaffold_11731
Class: Alphaproteobacteria (57.14%)
7 5038 bp 66.77 8.13 85.27
PLM3_30_b1_sep16_scaffold_78305
Order: Rhizobiales (66.67%)
3 2713 bp 66.86 8.13 77.41
PLM3_30_b1_sep16_scaffold_19790
Order: Rhizobiales (60%)
5 4096 bp 66.65 8.13 89.21
PLM3_30_b1_sep16_scaffold_3815
Species: Rhodovulum sp. PH10 (50%)
12 13503 bp 66.60 8.14 97.80
PLM3_30_b1_sep16_scaffold_10101
Order: Rhizobiales (55.56%)
18 15780 bp 66.44 8.14 88.17
PLM3_30_b1_sep16_scaffold_10938
Order: Rhizobiales (66.67%)
6 5807 bp 67.01 8.14 97.23
PLM3_30_b1_sep16_scaffold_13414
Order: Rhizobiales (80%)
5 4019 bp 66.78 8.14 87.04
PLM3_30_b1_sep16_scaffold_3026
Phylum: Proteobacteria (50%)
10 8548 bp 65.85 8.14 88.13
PLM3_30_b1_sep16_scaffold_35146
Class: Betaproteobacteria (60%)
5 4582 bp 66.02 8.15 81.97
PLM3_30_b1_sep16_scaffold_18663
Class: Alphaproteobacteria (60%)
5 4893 bp 68.34 8.15 98.28
PLM3_30_b1_sep16_scaffold_46760
Genus: Bradyrhizobium (50%)
4 3109 bp 64.91 8.15 91.19
PLM3_30_b1_sep16_scaffold_51800
Species: Rhodopseudomonas palustris (50%)
4 2814 bp 64.14 8.16 89.98
PLM3_30_b1_sep16_scaffold_8249
Order: Rhizobiales (50%)
6 5218 bp 66.00 8.16 88.94
PLM3_30_b1_sep16_scaffold_28427
Genus: Bradyrhizobium (75%)
4 2647 bp 64.22 8.16 87.61
PLM3_30_b1_sep16_scaffold_12961
Phylum: Proteobacteria (66.67%)
6 4100 bp 66.34 8.16 93.73
PLM3_30_b1_sep16_scaffold_3843
Order: Rhizobiales (66.67%)
15 14611 bp 65.96 8.17 91.23
PLM3_30_b1_sep16_scaffold_67687
Species: Xanthobacter autotrophicus (66.67%)
3 2755 bp 65.37 8.17 76.44
PLM3_30_b1_sep16_scaffold_32540
Class: Alphaproteobacteria (66.67%)
6 5838 bp 69.27 8.17 94.14
PLM3_30_b1_sep16_scaffold_15135
Species: Afipia sp. P52-10 (50%)
6 3758 bp 66.34 8.18 80.39
PLM3_30_b1_sep16_scaffold_4590
Order: Rhizobiales (87.5%)
16 12086 bp 65.05 8.18 82.53
PLM3_30_b1_sep16_scaffold_6671
Order: Rhizobiales (50%)
10 7846 bp 63.33 8.18 83.32
PLM3_30_b1_sep16_scaffold_6722
Order: Rhizobiales (62.5%)
16 11096 bp 66.21 8.18 89.38
PLM3_30_b1_sep16_scaffold_35467
Class: Alphaproteobacteria (66.67%)
6 4323 bp 67.04 8.19 93.89
PLM3_30_b1_sep16_scaffold_13844
Phylum: Proteobacteria (80%)
5 3953 bp 65.37 8.20 78.62
PLM3_30_b1_sep16_scaffold_23450
Species: Rhodopseudomonas palustris (66.67%)
3 2945 bp 68.32 8.20 88.42
PLM3_30_b1_sep16_scaffold_7676
Order: Rhizobiales (62.5%)
8 5416 bp 67.54 8.20 87.54
PLM3_30_b1_sep16_scaffold_29619
Class: Alphaproteobacteria (66.67%)
3 3016 bp 65.32 8.21 78.48
Displaying items 351-400 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.