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PLM3_30_b2_sep16_scaffold_975

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_975_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3..734)
DNA (732bp) protein (244aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Quinolinate synthetase complex, A subunit Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL3_9BACT
quinolinate synthetase
PLM3_30_b2_sep16_scaffold_975_2
uncultured verrucomicrobium HF0500_18J03, Verrucomicrobia, Bacteria

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comp(914..1837)
DNA (924bp) protein (308aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured verrucomicrobium HF0500_18J03.;"
Shikimate dehydrogenase Tax=uncultured verrucomicrobium HF0500_18J03 RepID=E7C598_9BACT
shikimate dehydrogenase
PLM3_30_b2_sep16_scaffold_975_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2036..3712
DNA (1677bp) protein (559aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4D9B1_9BACT
PLM3_30_b2_sep16_scaffold_975_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3805..5127)
DNA (1323bp) protein (441aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamate--tRNA ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ9_9BACT
glnS; glutamyl-or glutaminyl-tRNA synthetase
PLM3_30_b2_sep16_scaffold_975_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5204..6238)
DNA (1035bp) protein (345aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00054821};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tRNA(Ile)-lysidine synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4D0P9_9BACT
tRNA(Ile) lysidine-34 synthase
PLM3_30_b2_sep16_scaffold_975_6
unknown

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6464..6661
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_975_7
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6806..7465
DNA (660bp) protein (220aa)
transcriptional regulator, TetR family protein Tax=Gemmata obscuriglobus RepID=UPI00016C4B93
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACE85096.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
PLM3_30_b2_sep16_scaffold_975_8
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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7458..8645
DNA (1188bp) protein (396aa)
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:CDH43282.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Efflux pump, RND family, membrane fusion protein bin=GWB2_Desulfobacterales_56_26 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
RND transporter
PLM3_30_b2_sep16_scaffold_975_9
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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8661..9545
DNA (885bp) protein (295aa)
Acriflavin resistance protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7V669_DESML
RND family efflux pump inner membrane protein
Acriflavin resistance protein {ECO:0000313|EMBL:EPR42144.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
Displaying 9 items

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