ggKbase home page

PLM3-1_170_b1_sep16_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_43_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..615)
DNA (615bp) protein (205aa)
DNA methylase (EC:2.1.1.113)
DNA modification methylase bin=GWC2_Methylomirabilis_70_24 species=Nostoc sp. genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b1_sep16_scaffold_43_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(731..3535)
DNA (2805bp) protein (935aa)
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] bin=CNBR_ACIDO species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribonucleoside-diphosphate reductase class II (EC:1.17.4.1)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_43_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(3795..4394)
DNA (600bp) protein (200aa)
Putative uncharacterized protein Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) RepID=F2UH13_SALR5
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_43_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(4401..5963)
DNA (1563bp) protein (521aa)
Multi-sensor signal transduction histidine kinase (EC:2.7.3.-) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_43_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(6006..7445)
DNA (1440bp) protein (480aa)
response regulator in two-component regulatory system, sigma 54-dependent bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_43_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

7493..8263
DNA (771bp) protein (257aa)
id=12555789 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
CAAX amino terminal protease family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_43_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8275..8784)
DNA (510bp) protein (170aa)
id=12555782 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_43_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8806..11295)
DNA (2490bp) protein (830aa)
surface antigen bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
outer membrane protein/protective antigen OMA87
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_43_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11292..11678)
DNA (387bp) protein (129aa)
surface antigen bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_43_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(11678..15667)
DNA (3990bp) protein (1330aa)
hypothetical protein; K09800 hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_43_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(15733..16248)
DNA (516bp) protein (172aa)
Biotin/lipoic acid binding domain-containing protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MMY8_CORCM
cfiA; biotin/lipoic acid binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_43_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(16256..17749)
DNA (1494bp) protein (498aa)
acetyl-CoA carboxylase, biotin carboxylase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative biotin carboxylase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_43_13
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(17858..19399)
DNA (1542bp) protein (514aa)
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pccB; methylmalonyl-CoA decarboxylase (EC:6.4.1.3)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_43_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(19498..20151)
DNA (654bp) protein (218aa)
putative translaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2] bin=CNBR_ACIDO species=Methanocaldococcus vulcanius genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tal; transaldolase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_43_15
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(20170..21474)
DNA (1305bp) protein (435aa)
Fibronectin, type III bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
fibronectin, type III domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_43_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21471..22817)
DNA (1347bp) protein (449aa)
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hslU; ATP-dependent protease ATP-binding subunit HslU
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_43_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(22904..23407)
DNA (504bp) protein (168aa)
ATP dependent peptidase subunit CodW; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
HslV; ATP-dependent protease peptidase subunit
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_43_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23534..24952)
DNA (1419bp) protein (473aa)
amino acid transporter Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B614F8
amino acid permease-associated protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_43_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(24994..25518)
DNA (525bp) protein (175aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_43_20
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(25637..26521)
DNA (885bp) protein (295aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_43_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(26611..27423)
DNA (813bp) protein (271aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_43_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(27426..28052)
DNA (627bp) protein (209aa)
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_43_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

28217..30313
DNA (2097bp) protein (699aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3)
Signal transduction histidine kinase, nitrogen specific, NtrB Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXN7_ROSS1
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_43_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

30342..30926
DNA (585bp) protein (195aa)
response regulator receiver protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
response regulator receiver protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_43_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

30995..32983
DNA (1989bp) protein (663aa)
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 bin=CNBR_ACIDO species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_43_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

33245..34450
DNA (1206bp) protein (402aa)
signal transduction histidine kinase, nitrogen specific, NtrB bin=CNBR_ACIDO species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gnfL; nitrogen fixation master sensor histidine kinase, PAS domain-containing
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_43_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

34545..35954
DNA (1410bp) protein (470aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains bin=CNBR_ACIDO species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_43_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(35961..36974)
DNA (1014bp) protein (338aa)
xerC; tyrosine recombinase XerC bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
site-specific recombinase XerD
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_43_29
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(36971..38413)
DNA (1443bp) protein (481aa)
hypothetical protein (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] bin=CNBR_ACIDO species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tRNA:m(5)U-54 methyltransferase (EC:2.1.1.74)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_43_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(38498..40897)
DNA (2400bp) protein (800aa)
topA; DNA topoisomerase I (EC:5.99.1.2) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA topoisomerase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Displaying items 1-30 of 47 in total

View Taxonomy