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PLM3-1_170_b1_sep16_scaffold_314

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_314_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(197..541)
DNA (345bp) protein (115aa)
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_314_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(504..1466)
DNA (963bp) protein (321aa)
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
two component sigma54 specific Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_314_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1571..3055)
DNA (1485bp) protein (495aa)
degP4; S1C family peptidase bin=CNBR_ACIDO species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
S1C family peptidase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_314_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3078..5084)
DNA (2007bp) protein (669aa)
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] bin=CNBR_ACIDO species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA ligase (EC:6.5.1.2)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5257..6261)
DNA (1005bp) protein (335aa)
ispB; octaprenyl diphosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
trans-hexaprenyltranstransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_314_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6335..7063)
DNA (729bp) protein (243aa)
putative DNase (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-] bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
TatD family hydrolase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_314_7
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(7135..8916)
DNA (1782bp) protein (594aa)
Pyrrolo-quinoline quinone Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YBW9_KETVW
Pyrrolo-quinoline quinone
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_314_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8943..9587)
DNA (645bp) protein (215aa)
quinoprotein glucose dehydrogenase (EC:1.1.5.2)
Quinoprotein glucose dehydrogenase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025P1_SOLUE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_314_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9768..10331
DNA (564bp) protein (188aa)
hypothetical protein bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_314_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10340..11287)
DNA (948bp) protein (316aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00035D0251
cyclase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_314_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11312..12547)
DNA (1236bp) protein (412aa)
hypothetical protein Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037B5F75
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3-1_170_b1_sep16_scaffold_314_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12554..12907)
DNA (354bp) protein (118aa)
Transcriptional modulator of MazE/toxin, MazF Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G2X9_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(13401..14351)
DNA (951bp) protein (317aa)
Putative aminopeptidase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D937_SINAD
peptidase M28
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_314_14
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(14508..14987)
DNA (480bp) protein (160aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003765560
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_314_15
unknown

Not on your lists

comp(15113..15373)
DNA (261bp) protein (87aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_314_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


comp(15398..17356)
DNA (1959bp) protein (653aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] bin=CNBR_ACIDO species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methionyl-tRNA synthetase (EC:6.1.1.10)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_314_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17373..18602)
DNA (1230bp) protein (410aa)
UPF0272 protein Mahau_1643 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZZJ8_MAHA5
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_314_18
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(18704..19399)
DNA (696bp) protein (232aa)
DNA repair protein RadC; K03630 DNA repair protein RadC bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA replication and repair protein RadC
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_314_19
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

19492..20067
DNA (576bp) protein (192aa)
Protein TolA bin=GWA2_Elusimicrobia_69_24 species=Monosiga brevicollis genus=Monosiga taxon_order=Choanoflagellida taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_314_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(20124..20939)
DNA (816bp) protein (272aa)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diaminopimelate epimerase (EC:5.1.1.7)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_314_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20941..21729)
DNA (789bp) protein (263aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_314_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

21885..23510
DNA (1626bp) protein (542aa)
Glycerol-3-phosphate dehydrogenase Tax=Moorea producens 3L RepID=F4XMP2_9CYAN
FAD dependent oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_314_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23566..24399)
DNA (834bp) protein (278aa)
hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_24
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24466..24915)
DNA (450bp) protein (150aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
D-tyrosyl-tRNA(Tyr) deacylase Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4ABI6_DESDJ
D-tyrosyl-tRNA(Tyr) deacylase
PLM3-1_170_b1_sep16_scaffold_314_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(24956..25147)
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_314_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(25356..26399)
DNA (1044bp) protein (348aa)
Glycosyltransferase Tax=uncultured Acidobacteria bacterium HF0770_27F21 RepID=E0XYT0_9BACT
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(26434..27636)
DNA (1203bp) protein (401aa)
Group 1 glycosyl transferase Tax=Leptolyngbya sp. Heron Island J RepID=U9W6X0_9CYAN
glycoside hydrolase family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(27633..28370)
DNA (738bp) protein (246aa)
hypothetical protein bin=CNBR_ACIDO species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(28514..29494)
DNA (981bp) protein (327aa)
NAD-dependent epimerase/dehydratase family protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
NAD-dependent epimerase/dehydratase family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_314_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(29479..30330)
DNA (852bp) protein (284aa)
methyltransferase bin=CNBR_ACIDO species=Novosphingobium pentaromativorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying items 1-30 of 36 in total

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