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PLM3-1_170_b1_sep16_scaffold_561

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_561_1
unknown

Not on your lists

3..125
DNA (123bp) protein (41aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_561_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

647..1237
DNA (591bp) protein (197aa)
Putative uncharacterized protein Tax=Myxococcus xanthus RepID=Q1DEY5_MYXXD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_561_3
unknown

Not on your lists

comp(1938..2153)
DNA (216bp) protein (72aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_561_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2171..2509)
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_561_5

Not on your lists

comp(2688..4115)
DNA (1428bp) protein (476aa)
Sigma-54-dependent transcriptional response regulator {ECO:0000313|EMBL:AHN97847.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
Fis family two component sigma-54 specific transcriptional regulator bin=CNBR_ACIDO species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family two component sigma-54 specific transcriptional regulator
PLM3-1_170_b1_sep16_scaffold_561_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4545..4742
DNA (198bp) protein (66aa)
id=12554722 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_561_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4821..5033
DNA (213bp) protein (71aa)
id=12554721 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_561_8

Not on your lists

5388..6170
DNA (783bp) protein (261aa)
RNA polymerase sigma-D factor {ECO:0000313|EMBL:AHN97850.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
fliA1; RNA polymerase sigma factor for flagellar operon; K02405 RNA polymerase sigma factor for flagellar operon FliA bin=CNBR_ACIDO species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
fliA; flagellar operon sigma factor FliA
PLM3-1_170_b1_sep16_scaffold_561_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6213..7766)
DNA (1554bp) protein (518aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] bin=CNBR_ACIDO species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_561_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7789..8460)
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Bacillus sp. 1NLA3E RepID=N0AYB7_9BACI
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_561_11
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8514..10859)
DNA (2346bp) protein (782aa)
Copper-translocating P-type ATPase Tax=Geobacter sp. (strain M21) RepID=C6E8B6_GEOSM
ATPase P
Tax=GWC2_Geobacteraceae_58_44_curated
PLM3-1_170_b1_sep16_scaffold_561_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10891..11361)
DNA (471bp) protein (157aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-) bin=CNBR_ACIDO species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_561_13

Not on your lists

11417..13234
DNA (1818bp) protein (606aa)
Sigma factor sigB regulation protein rsbU {ECO:0000313|EMBL:AHN97855.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
serine phosphatase bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Sigma factor sigB regulation protein rsbU
PLM3-1_170_b1_sep16_scaffold_561_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(13237..13593)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_561_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14170..15432)
DNA (1263bp) protein (421aa)
id=12554715 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_561_16
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(15429..16439)
DNA (1011bp) protein (337aa)
Hypothetical conserved protein Tax=uncultured Acidobacteria bacterium RepID=H5SDC6_9BACT
Hypothetical conserved protein {ECO:0000313|EMBL:BAL54162.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_561_17
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(16456..17187)
DNA (732bp) protein (244aa)
Cytochrome c biogenesis protein, transmembrane region Tax=Magnetococcus sp. (strain MC-1) RepID=A0L479_MAGSM
cytochrome C biogenesis protein, transmembrane region
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_561_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17210..19939)
DNA (2730bp) protein (910aa)
peptidase M1 membrane alanine aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase m1 membrane alanine aminopeptidase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_561_19

Not on your lists

comp(19959..21143)
DNA (1185bp) protein (395aa)
8-amino-7-oxononanoate synthase {ECO:0000256|SAAS:SAAS00087543}; EC=2.3.1.47 {ECO:0000256|SAAS:SAAS00087543};; species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W46_SOLUE
PLM3-1_170_b1_sep16_scaffold_561_20
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(21262..23271)
DNA (2010bp) protein (670aa)
hypothetical protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_561_21

Not on your lists

comp(23292..24506)
DNA (1215bp) protein (405aa)
L-alanine aminotransferase (EC:2.6.1.-) bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
L-alanine aminotransferase (EC:2.6.1.-)
L-alanine aminotransferase {ECO:0000313|EMBL:AHN97864.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
PLM3-1_170_b1_sep16_scaffold_561_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

24675..25610
DNA (936bp) protein (312aa)
von Willebrand factor, type A bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
von Willebrand factor A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_561_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

25670..26392
DNA (723bp) protein (241aa)
OmpA/MotB domain-containing protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
OmpA/MotB family outer membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_561_24
unknown

Not on your lists

26534..27148
DNA (615bp) protein (205aa)
id=12554712 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM3-1_170_b1_sep16_scaffold_561_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27219..27383
DNA (165bp) protein (55aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 25 items

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