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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 601-650 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_19092
Domain: Bacteria (57.14%)
7 4045 bp 67.14 7.16 83.66
PLM3_30_b1_sep16_scaffold_3342
Genus: Bradyrhizobium (50%)
12 13873 bp 64.82 8.25 83.64
PLM3_30_b1_sep16_scaffold_14642
Order: Rhizobiales (50%)
6 5219 bp 68.84 8.08 83.58
PLM3_30_b1_sep16_scaffold_5818
Order: Rhizobiales (55.56%)
9 6240 bp 64.68 7.91 83.56
PLM3_30_b1_sep16_scaffold_12695
Order: Rhizobiales (50%)
6 4148 bp 63.62 7.92 83.53
PLM3_30_b1_sep16_scaffold_22189
Phylum: Proteobacteria (80%)
5 4559 bp 65.12 10.13 83.51
PLM3_30_b1_sep16_scaffold_14346
Species: Afipia clevelandensis (50%)
4 3873 bp 63.77 9.02 83.42
PLM3_30_b1_sep16_scaffold_15482
Class: Alphaproteobacteria (80%)
5 4132 bp 62.42 7.12 83.35
PLM3_30_b1_sep16_scaffold_6671
Order: Rhizobiales (50%)
10 7846 bp 63.33 8.18 83.32
PLM3_30_b1_sep16_scaffold_34885
Genus: Bradyrhizobium (50%)
4 3787 bp 62.34 6.97 83.31
PLM3_30_b1_sep16_scaffold_8109
Order: Rhizobiales (60%)
10 7960 bp 65.64 6.63 83.29
PLM3_30_b1_sep16_scaffold_16675
Class: Betaproteobacteria (50%)
4 3559 bp 65.30 8.72 83.28
PLM3_30_b1_sep16_scaffold_7709
Class: Alphaproteobacteria (71.43%)
7 5405 bp 65.29 7.35 83.26
PLM3_30_b1_sep16_scaffold_9747
Domain: Bacteria (60%)
10 4777 bp 66.17 8.38 83.21
PLM3_30_b1_sep16_scaffold_4034
Order: Rhizobiales (57.14%)
7 7438 bp 66.34 8.61 83.21
PLM3_30_b1_sep16_scaffold_8243
Order: Rhizobiales (50%)
10 9695 bp 65.55 9.25 83.18
PLM3_30_b1_sep16_scaffold_8154
Class: Alphaproteobacteria (71.43%)
7 6331 bp 63.54 12.06 83.16
PLM3_30_b1_sep16_scaffold_8216
Class: Alphaproteobacteria (85.71%)
7 6366 bp 66.78 10.32 83.08
PLM3_30_b1_sep16_scaffold_12271
Class: Alphaproteobacteria (60%)
5 4221 bp 66.88 7.68 83.01
PLM3_30_b1_sep16_scaffold_11099
Order: Rhizobiales (85.71%)
7 5285 bp 63.69 7.83 82.99
PLM3_30_b1_sep16_scaffold_22605
Class: Alphaproteobacteria (62.5%)
8 5408 bp 65.16 9.18 82.99
PLM3_30_b1_sep16_scaffold_12233
Class: Alphaproteobacteria (83.33%)
12 8641 bp 65.15 7.92 82.94
PLM3_30_b1_sep16_scaffold_14452
Order: Rhizobiales (57.14%)
7 7087 bp 64.43 8.25 82.88
PLM3_30_b1_sep16_scaffold_18672
Genus: Bradyrhizobium (50%)
4 3338 bp 67.05 6.25 82.86
PLM3_30_b1_sep16_scaffold_3350
Phylum: Proteobacteria (77.78%)
9 8123 bp 63.90 8.33 82.77
PLM3_30_b1_sep16_scaffold_25374
Order: Rhizobiales (60%)
5 4793 bp 65.24 8.79 82.56
PLM3_30_b1_sep16_scaffold_4590
Order: Rhizobiales (87.5%)
16 12086 bp 65.05 8.18 82.53
PLM3_30_b1_sep16_scaffold_2255
Class: Alphaproteobacteria (50%)
14 12004 bp 65.67 7.45 82.47
PLM3_30_b1_sep16_scaffold_11363
Genus: Bradyrhizobium (60%)
5 5193 bp 63.39 6.85 82.44
PLM3_30_b1_sep16_scaffold_2933
Order: Rhizobiales (50%)
20 19329 bp 66.38 7.99 82.24
PLM3_30_b1_sep16_scaffold_54080
Class: Alphaproteobacteria (60%)
5 3015 bp 64.18 8.41 82.09
PLM3_30_b1_sep16_scaffold_7358
Class: Alphaproteobacteria (80%)
5 5538 bp 67.21 7.18 82.02
PLM3_30_b1_sep16_scaffold_7666
Class: Alphaproteobacteria (50%)
6 6824 bp 68.10 8.77 81.99
PLM3_30_b1_sep16_scaffold_5164
Class: Alphaproteobacteria (55.56%)
9 6627 bp 63.42 7.83 81.98
PLM3_30_b1_sep16_scaffold_35146
Class: Betaproteobacteria (60%)
5 4582 bp 66.02 8.15 81.97
PLM3_30_b1_sep16_scaffold_10783
Order: Rhizobiales (50%)
6 4531 bp 65.33 6.49 81.90
PLM3_30_b1_sep16_scaffold_9997
Class: Alphaproteobacteria (72.73%)
11 13508 bp 65.13 9.11 81.88
PLM3_30_b1_sep16_scaffold_48388
Species: Aurantimonas manganoxydans (75%)
4 2671 bp 65.07 7.75 81.88
PLM3_30_b1_sep16_scaffold_7519
Order: Rhizobiales (80%)
5 6839 bp 64.40 8.03 81.81
PLM3_30_b1_sep16_scaffold_11778
Genus: Bradyrhizobium (50%)
4 4317 bp 68.03 8.93 81.79
PLM3_30_b1_sep16_scaffold_4331
Class: Alphaproteobacteria (70%)
10 7211 bp 66.62 8.80 81.75
PLM3_30_b1_sep16_scaffold_15676
Phylum: Proteobacteria (66.67%)
9 5239 bp 66.06 7.01 81.60
PLM3_30_b1_sep16_scaffold_32764
Species: Rhodovulum sp. PH10 (66.67%)
3 3173 bp 64.77 9.50 81.59
PLM3_30_b1_sep16_scaffold_52361
Species: Afipia sp. P52-10 (50%)
2 2725 bp 65.28 7.05 81.58
PLM3_30_b1_sep16_scaffold_15347
Order: Rhizobiales (50%)
6 3729 bp 65.54 6.68 81.58
PLM3_30_b1_sep16_scaffold_3622
Order: Rhizobiales (60%)
15 10738 bp 65.65 9.00 81.45
PLM3_30_b1_sep16_scaffold_10729
Order: Rhizobiales (100%)
5 4541 bp 64.61 7.30 81.39
PLM3_30_b1_sep16_scaffold_10425
Order: Rhizobiales (80%)
10 8017 bp 64.06 8.83 81.39
PLM3_30_b1_sep16_scaffold_2700
Order: Rhizobiales (81.82%)
11 9034 bp 65.08 7.39 81.26
PLM3_30_b1_sep16_scaffold_25640
Order: Rhizobiales (50%)
6 3745 bp 65.71 7.17 81.23
Displaying items 601-650 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.