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PLM3_60_coex_sep16_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_104_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..103)
DNA (102bp) protein (34aa)
Transposase IS110 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FBJ3_9RHIZ
transposase
Transposase IS110 {ECO:0000313|EMBL:ESX63781.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
PLM3_60_coex_sep16_scaffold_104_2
unknown

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287..790
DNA (504bp) protein (168aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037FB1B6
DinB family protein {ECO:0000313|EMBL:CPR15261.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
DinB family protein
PLM3_60_coex_sep16_scaffold_104_3
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1320..2264
DNA (945bp) protein (315aa)
Uncharacterized protein Tax=Marinobacter nanhaiticus D15-8W RepID=N6X5B1_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ENO16248.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter nanhaiticus D15-8W.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_104_4
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2267..3379
DNA (1113bp) protein (371aa)
DNA-O6-methylguanine--protein-cysteine S-methyltransferase Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B9V9_PARDP
methylated-DNA--protein-cysteine methyltransferase
6-O-methylguanine DNA methyltransferase {ECO:0000313|EMBL:KFI05958.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
PLM3_60_coex_sep16_scaffold_104_5
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3412..3885
DNA (474bp) protein (158aa)
Uncharacterized protein Tax=Phyllobacterium sp. YR531 RepID=J2V742_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJN01652.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
Protein of unknown function (DUF1203)
PLM3_60_coex_sep16_scaffold_104_6
Mycobacterium sp. KMS, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4029..9332
DNA (5304bp) protein (1768aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain KMS).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P9F5_DESSD
UDP-N-acetylmuramyl pentapeptide synthase
PLM3_60_coex_sep16_scaffold_104_7
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9443..11107
DNA (1665bp) protein (555aa)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6GBY9_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM3_60_coex_sep16_scaffold_104_8
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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11152..12183
DNA (1032bp) protein (344aa)
Uncharacterized protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P479_DESSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF78293.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
PLM3_60_coex_sep16_scaffold_104_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12461..13174
DNA (714bp) protein (238aa)
Putative beta-hydroxylase Tax=Variovorax paradoxus B4 RepID=T1XIA4_VARPD
putative beta-hydroxylase
Putative beta-hydroxylase {ECO:0000313|EMBL:AGU52602.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
PLM3_60_coex_sep16_scaffold_104_10
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13319..15013
DNA (1695bp) protein (565aa)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6GBY9_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM3_60_coex_sep16_scaffold_104_11
Pinctada maxima, Pinctada, Pterioida, Pteriomorphia, Mollusca, Metazoa

Not on your lists

comp(15160..16026)
DNA (867bp) protein (289aa)
cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) (EC:3.2.1.14)
Uncharacterized protein Tax=Aspergillus niger RepID=G3XS90_ASPNA
Shell matrix protein {ECO:0000313|EMBL:BAL21566.1}; species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Pteriomorphia; Pterioida; Pterioidea; Pteriidae; Pinctada.;" source="Pinctada maxima (Silver-lipped pearl oyster) (White-lipped pearl; oyster).;"
PLM3_60_coex_sep16_scaffold_104_12
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16571..17368
DNA (798bp) protein (266aa)
hypothetical protein Tax=Dasania marina RepID=UPI000371E13A
caiD-1; carnitinyl-CoA dehydratase
Carnitinyl-CoA dehydratase {ECO:0000313|EMBL:AAV95951.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
PLM3_60_coex_sep16_scaffold_104_13
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17453..18478)
DNA (1026bp) protein (342aa)
Phosphate ABC transporter, periplasmic binding protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRF5_TISMK
sphX; phosphate ABC transporter substrate-binding protein
Phosphate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:AFK55343.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_60_coex_sep16_scaffold_104_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18731..19738)
DNA (1008bp) protein (336aa)
Phosphate ABC transporter, periplasmic binding protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRF5_TISMK
sphX; phosphate ABC transporter substrate-binding protein
Phosphate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:AFK55343.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_60_coex_sep16_scaffold_104_15
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20125..22647
DNA (2523bp) protein (841aa)
Uncharacterized protein Tax=Asticcacaulis sp. AC402 RepID=V4NNW8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ77651.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
putative methyl-accepting chemotaxis receptor
PLM3_60_coex_sep16_scaffold_104_16

Not on your lists

comp(22675..23406)
DNA (732bp) protein (244aa)
Putative uncharacterized protein Tax=uncultured bacterium BLR7 RepID=C0INR2_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACN58948.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium BLR7.;"
peptidase C14 caspase catalytic subunit p20
PLM3_60_coex_sep16_scaffold_104_17
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23451..24599)
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CAM02129.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CAM02129.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Acyl-CoA dehydrogenase Tax=Saccharopolyspora erythraea (strain NRRL 23338) RepID=A4FDK4_SACEN
PLM3_60_coex_sep16_scaffold_104_18
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25042..27090)
DNA (2049bp) protein (683aa)
Peptidase S15 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C221_NITHN
peptidase S15
Peptidase S15 {ECO:0000313|EMBL:ADE16609.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_60_coex_sep16_scaffold_104_19
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(27620..28480)
DNA (861bp) protein (287aa)
id=14425208 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_60_coex_sep16_scaffold_104_20
unknown

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comp(29540..29695)
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_104_21
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29704..31728)
DNA (2025bp) protein (675aa)
Peptidase S15 Tax=Nitrosococcus oceani RepID=Q3J915_NITOC
peptidase S15
Peptidase S15 {ECO:0000313|EMBL:ABA58681.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848).;"
PLM3_60_coex_sep16_scaffold_104_22
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31798..32649)
DNA (852bp) protein (284aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI0003647E54
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM3_60_coex_sep16_scaffold_104_23
alpha proteobacterium U95, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32961..33710
DNA (750bp) protein (250aa)
ABC transporter substrate-binding protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628B2E
Putative amino acid uptake ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:AGI04206.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U95.;"
putative amino acid uptake ABC transporter periplasmic solute-binding protein
PLM3_60_coex_sep16_scaffold_104_24
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33881..35542
DNA (1662bp) protein (554aa)
Amino acid uptake ABC transporter permease protein Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PMG1_PSEUV
amino acid uptake ABC transporter permease protein
Amino acid uptake ABC transporter permease protein {ECO:0000313|EMBL:AEV38152.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
PLM3_60_coex_sep16_scaffold_104_25
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35511..36941
DNA (1431bp) protein (477aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
Beta-galactosidase Tax=Pseudovibrio sp. JE062 RepID=B6QX09_9RHOB
bglA; Beta-glucosidase A
PLM3_60_coex_sep16_scaffold_104_26
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36957..40037
DNA (3081bp) protein (1027aa)
hypothetical protein Tax=Pseudaminobacter salicylatoxidans RepID=UPI00035EE2C1
putative aminotransferase protein
Tax=BJP_IG2158_Rhodobacterales_69_12
PLM3_60_coex_sep16_scaffold_104_27
unknown

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40250..40414
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_104_28
unknown

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40796..40987
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_104_29
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41039..41956
DNA (918bp) protein (306aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TMK8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65806.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative Permease of the drug/metabolite transporter (DMT) superfamily
PLM3_60_coex_sep16_scaffold_104_30
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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42036..43727
DNA (1692bp) protein (564aa)
Acetoacetyl-CoA synthetase Tax=Caenispirillum salinarum AK4 RepID=K9H9Q8_9PROT
Fatty acid--CoA ligase {ECO:0000313|EMBL:ETX08176.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
acyl-CoA synthetase
Displaying items 1-30 of 55 in total

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