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PLM3_60_coex_sep16_scaffold_1892

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1892_1
unknown

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3..221
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1892_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(131..511)
DNA (381bp) protein (127aa)
50S ribosomal protein L19 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplS; 50S ribosomal protein L19
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1892_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(544..1293)
DNA (750bp) protein (250aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (Guanine-N1)-methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1892_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1305..1754)
DNA (450bp) protein (150aa)
16S rRNA-processing protein RimM bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
16S rRNA processing protein RimM
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_1892_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(1820..2068)
DNA (249bp) protein (83aa)
30S ribosomal protein S16 bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsP; 30S ribosomal protein S16
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1892_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(2073..3422)
DNA (1350bp) protein (450aa)
Signal recognition particle protein bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal recognition particle protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1892_7
unknown

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comp(3494..3700)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1892_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3853..4539)
DNA (687bp) protein (229aa)
HAD-superfamily hydrolase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] bin=bin7_NC10_sister species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1892_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4545..5924)
DNA (1380bp) protein (460aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
16S rRNA methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1892_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5921..6700)
DNA (780bp) protein (260aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1892_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6843..7367)
DNA (525bp) protein (175aa)
def; peptide deformylase (EC:3.5.1.88)
peptide deformylase bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1892_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7355..9190)
DNA (1836bp) protein (612aa)
Primosomal protein N' bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
priA; primosomal protein N', ATP-dependent helicase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1892_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9326..9934)
DNA (609bp) protein (203aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1892_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10012..11238)
DNA (1227bp) protein (409aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1892_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11235..11447)
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoZ; DNA-directed RNA polymerase subunit omega
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1892_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11447..11869)
DNA (423bp) protein (141aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 16 items

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