ggKbase home page

PLM4_5_b1_sep16_scaffold_2788

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2788_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2..1213
DNA (1212bp) protein (404aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
Beta-ketoacyl synthase Tax=Pedosphaera parvula Ellin514 RepID=B9XGA3_9BACT
Beta-ketoacyl synthase {ECO:0000313|EMBL:EEF61265.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2788_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1210..2268
DNA (1059bp) protein (353aa)
Beta-ketoacyl synthase Tax=Pedosphaera parvula Ellin514 RepID=B9XGA4_9BACT
Beta-ketoacyl synthase {ECO:0000313|EMBL:EEF61266.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
beta-ketoacyl synthase
PLM4_5_b1_sep16_scaffold_2788_3

Not on your lists

2265..2642
DNA (378bp) protein (126aa)
Putative uncharacterized protein Tax=uncultured marine bacterium MedDCM-OCT-S04-C40 RepID=D6PD03_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ADD93604.1}; species="Bacteria; environmental samples.;" source="uncultured marine bacterium MedDCM-OCT-S04-C40.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_2788_4
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2651..3715
DNA (1065bp) protein (355aa)
Putative secreted protein Tax=Rhodopirellula europaea SH398 RepID=M5S7A2_9PLAN
Putative secreted protein {ECO:0000313|EMBL:EMI27326.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_2788_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3805..5091
DNA (1287bp) protein (429aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Acetylornithine aminotransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XQ48_9BACT
argD; Ornithine/acetylornithine aminotransferase
PLM4_5_b1_sep16_scaffold_2788_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5134..5826
DNA (693bp) protein (231aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ornithine carbamoyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XQ49_9BACT
ornithine carbamoyltransferase
PLM4_5_b1_sep16_scaffold_2788_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5784..5987
DNA (204bp) protein (68aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ornithine carbamoyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XQ49_9BACT
ornithine carbamoyltransferase
PLM4_5_b1_sep16_scaffold_2788_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5984..6781)
DNA (798bp) protein (266aa)
Pseudouridine synthase Tax=Pedosphaera parvula Ellin514 RepID=B9XQ50_9BACT
Pseudouridine synthase {ECO:0000313|EMBL:EEF58054.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pseudouridine synthase
PLM4_5_b1_sep16_scaffold_2788_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6951..8618)
DNA (1668bp) protein (556aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XQ51_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58055.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2788_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8656..9108
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XQ52_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58056.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2788_11
unknown

Not on your lists

comp(9210..9938)
DNA (729bp) protein (243aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2788_12
unknown

Not on your lists

comp(10072..10320)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2788_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10379..12070
DNA (1692bp) protein (564aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Histidine kinase Tax=Pedosphaera parvula Ellin514 RepID=B9XEM2_9BACT
sensor protein
PLM4_5_b1_sep16_scaffold_2788_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12079..12774
DNA (696bp) protein (232aa)
Two component transcriptional regulator, winged helix family Tax=Pedosphaera parvula Ellin514 RepID=B9XEM3_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF61737.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component transcriptional regulator
PLM4_5_b1_sep16_scaffold_2788_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12869..15508
DNA (2640bp) protein (880aa)
FOG: Ankyrin repeat-like protein Tax=Pedosphaera parvula Ellin514 RepID=B9XEM5_9BACT
FOG: Ankyrin repeat-like protein {ECO:0000313|EMBL:EEF61739.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pfs, nacht and ankyrin domain protein
PLM4_5_b1_sep16_scaffold_2788_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15943..16851)
DNA (909bp) protein (303aa)
6-phosphogluconate dehydrogenase NAD-binding Tax=Pedosphaera parvula Ellin514 RepID=B9XQ05_9BACT
6-phosphogluconate dehydrogenase NAD-binding {ECO:0000313|EMBL:EEF58102.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-hydroxy-3-oxopropionate reductase
PLM4_5_b1_sep16_scaffold_2788_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17478..17843
DNA (366bp) protein (122aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000378B75B
Uncharacterized protein {ECO:0000313|EMBL:EEF57564.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2788_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17907..18350
DNA (444bp) protein (148aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GMP synthase [glutamine-hydrolyzing] Tax=Pedosphaera parvula Ellin514 RepID=B9XRJ2_9BACT
GMP synthase
Displaying 18 items

View Taxonomy