ggKbase home page
Advanced Search
Search Help

QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 351-400 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_2093 11 7260 bp 54.60 22.02 73.47
qs_1_scaffold_4432 11 8238 bp 54.09 22.53 70.17
qs_1_scaffold_1288 11 10507 bp 54.48 21.24 71.81
qs_1_scaffold_690
Domain: Viridiplantae (54.55%)
11 18215 bp 53.98 20.92 74.31
qs_1_scaffold_1081 11 12850 bp 55.37 20.88 82.95
qs_1_scaffold_577 11 15761 bp 56.70 20.79 88.17
qs_1_scaffold_1474 11 12675 bp 56.11 19.55 76.09
qs_1_scaffold_3226 11 10933 bp 53.75 21.49 78.29
qs_1_scaffold_2074 11 14324 bp 54.27 21.58 82.48
qs_1_scaffold_1430 11 9322 bp 56.49 20.89 82.00
qs_1_scaffold_1155 11 10994 bp 55.86 20.73 78.23
qs_1_scaffold_1340 11 9722 bp 55.59 20.03 85.11
qs_1_scaffold_1640 11 8465 bp 55.05 20.21 69.85
qs_1_scaffold_5258 11 9506 bp 61.24 19.86 82.94
qs_1_scaffold_2749 11 13193 bp 54.46 23.38 65.22
qs_1_scaffold_1990 11 7475 bp 54.54 15.95 69.79
qs_1_scaffold_546
Domain: Viridiplantae (54.55%)
11 16249 bp 55.06 21.19 71.62
qs_1_scaffold_976 11 11645 bp 56.01 20.24 65.59
qs_1_scaffold_1761 11 9141 bp 62.24 19.42 92.91
qs_1_scaffold_1278 11 9987 bp 54.20 21.88 89.37
qs_1_scaffold_1210 10 10307 bp 55.06 20.68 72.01
qs_1_scaffold_2593 10 7457 bp 52.55 21.87 66.38
qs_1_scaffold_1557 10 9583 bp 56.21 19.12 72.85
qs_1_scaffold_1420 10 9365 bp 56.76 20.58 86.88
qs_1_scaffold_1352 10 9682 bp 55.83 19.63 80.10
qs_1_scaffold_8239 10 7274 bp 58.43 21.06 75.93
qs_1_scaffold_686 10 14258 bp 54.14 21.96 84.21
qs_1_scaffold_1584 10 8684 bp 52.95 22.06 69.96
qs_1_scaffold_1286 10 12447 bp 54.61 20.64 68.96
qs_1_scaffold_12864 10 5716 bp 52.61 21.75 55.42
qs_1_scaffold_2231 10 6931 bp 56.87 20.11 83.84
qs_1_scaffold_11951
Domain: Viridiplantae (50%)
10 4052 bp 38.72 221.50 88.33
qs_1_scaffold_1242
Domain: Viridiplantae (50%)
10 10171 bp 64.32 20.29 92.62
qs_1_scaffold_1127
Domain: Viridiplantae (50%)
10 10740 bp 56.18 21.95 79.69
qs_1_scaffold_1588 10 8671 bp 56.56 20.51 55.74
qs_1_scaffold_1957 10 7534 bp 52.47 24.22 82.11
qs_1_scaffold_2672 10 10854 bp 54.86 21.66 78.25
qs_1_scaffold_2880 10 9101 bp 53.59 19.75 65.99
qs_1_scaffold_3134 10 7295 bp 56.70 20.09 72.79
qs_1_scaffold_740 10 13762 bp 54.72 21.04 83.95
qs_1_scaffold_1293 10 9904 bp 56.45 20.75 87.27
qs_1_scaffold_2815 10 8993 bp 54.99 19.65 71.32
qs_1_scaffold_2170 10 9111 bp 53.61 21.17 80.90
qs_1_scaffold_1065 10 11100 bp 54.10 22.27 80.59
qs_1_scaffold_814
Order: Mamiellales (50%)
10 13058 bp 57.80 21.53 87.83
qs_1_scaffold_3653 10 5097 bp 55.01 22.48 85.82
qs_1_scaffold_1090 10 10953 bp 54.22 20.20 70.34
qs_1_scaffold_4353 10 10707 bp 55.37 20.90 67.53
qs_1_scaffold_723 10 13923 bp 53.44 22.60 89.46
qs_1_scaffold_1667 10 8359 bp 56.47 19.88 76.88
Displaying items 351-400 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.