ggKbase home page

qs_1_scaffold_438

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_438_1
unknown

Not on your lists

2..79
DNA (78bp) protein (26aa)

This feature has no annotations

qs_1_scaffold_438_2
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

516..692
DNA (177bp) protein (59aa)
Transposase (ISH5) n=1 Tax=Natrialba aegyptia DSM 13077 RepID=M0APS9_9EURY
Transposase (ISH5) {ECO:0000313|EMBL:ELY99942.1}; TaxID=1227491 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba aegyptia DSM 13077.;"
qs_1_scaffold_438_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2388..2951
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SH44_RHOMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN72272.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mari
qs_1_scaffold_438_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2930..3139)
DNA (210bp) protein (70aa)
Choline dehydrogenase {ECO:0000313|EMBL:CCW18090.1}; EC=1.1.99.1 {ECO:0000313|EMBL:CCW18090.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
Choline dehydrogenase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLK1_9SPHN
glucose-methanol-choline oxidoreductase
qs_1_scaffold_438_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3214..6117)
DNA (2904bp) protein (968aa)
UPF0182 protein SRU_2225 n=2 Tax=Salinibacter ruber RepID=Y2225_SALRD
hypothetical protein
UPF0182 protein SRU_2225 {ECO:0000255|HAMAP-Rule:MF_01600}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter
qs_1_scaffold_438_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6294..6671)
DNA (378bp) protein (126aa)
fdx; ferredoxin
fdx; ferredoxin id=24657822 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Ferredoxin {ECO:0000313|EMBL:CBH25030.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8)
qs_1_scaffold_438_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6780..9212)
DNA (2433bp) protein (811aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:S
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEA5_RHOM4
qs_1_scaffold_438_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

9525..12254
DNA (2730bp) protein (910aa)
Na-K-Cl cotransporter n=1 Tax=Salisaeta longa RepID=UPI0003B4162F
potE; Na-K-Cl cotransporter
Na-K-Cl cotransporter, putative {ECO:0000313|EMBL:ABC46258.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibac
qs_1_scaffold_438_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(12438..13067)
DNA (630bp) protein (210aa)
Nicotinamidase {ECO:0000313|EMBL:CBH24569.1}; EC=3.5.1.19 {ECO:0000313|EMBL:CBH24569.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salini
Nicotinamidase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H964_SALRM
pncA; nicotinamidase
qs_1_scaffold_438_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13207..14667
DNA (1461bp) protein (487aa)
aldehyde dehydrogenase n=1 Tax=Salisaeta longa RepID=UPI0003B7A581
aldH; Aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492, ECO:0000313|EMBL:CBH24570.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacte
qs_1_scaffold_438_11
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14667..16409
DNA (1743bp) protein (581aa)
Choline dehydrogenase n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4TI89_AMYOR
betA; choline dehydrogenase
Choline dehydrogenase {ECO:0000313|EMBL:KFZ83832.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
qs_1_scaffold_438_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(16442..16900)
DNA (459bp) protein (153aa)
Thioesterase superfamily protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIP7_RHOM4
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ACY48355.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothe
qs_1_scaffold_438_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(16942..17832)
DNA (891bp) protein (297aa)
Beta-lactamase domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIQ1_RHOM4
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACY48359.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermu
qs_1_scaffold_438_14
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17976..19046)
DNA (1071bp) protein (357aa)
Saccharopine dehydrogenase n=1 Tax=Halobacterium sp. DL1 RepID=G4IDL6_9EURY
Saccharopine dehydrogenase {ECO:0000313|EMBL:AHG04894.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.
Saccharopine dehydrogenase
qs_1_scaffold_438_15
Salinibacter_ruber, Salinibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19835..20680
DNA (846bp) protein (282aa)
id=24657018 bin=Salinibacter_ruber tax=Salinibacter_ruber
id=24657018 bin=Salinibacter_ruber tax=Salinibacter_ruber
qs_1_scaffold_438_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(20860..21186)
DNA (327bp) protein (109aa)
Sterol-binding domain protein n=2 Tax=Rhodothermus marinus RepID=D0MDT3_RHOM4
Sterol-binding domain-containing protein
Sterol-binding domain protein {ECO:0000313|EMBL:AEN72613.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermu
qs_1_scaffold_438_17
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

21594..23084
DNA (1491bp) protein (497aa)
phrB; photolyase; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] Tax=CG_Arma_02
deoxyribodipyrimidine photo-lyase n=1 Tax=Salisaeta longa RepID=UPI0003B2F945
Deoxyribodipyrimidine photo-lyase
qs_1_scaffold_438_18
unknown

Not on your lists

23325..23555
DNA (231bp) protein (77aa)

This feature has no annotations

qs_1_scaffold_438_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

23560..26094
DNA (2535bp) protein (845aa)
TonB-dependent outer membrane protein
TonB-dependent outer membrane protein id=24657719 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Putative TonB-dependent outer membrane protein {ECO:0000313|EMBL:ABC44624.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" so
qs_1_scaffold_438_20
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26246..26455
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYB7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EAY24590.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
Displaying 20 items

View Taxonomy