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RBG_16_Archaea_41_19_RBG_16_scaffold_741

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Archaea_41_19_RBG_16_scaffold_741_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2..1288
DNA (1287bp) protein (429aa)
Methyl-coenzyme M reductase, beta subunit; K00401 methyl-coenzyme M reductase beta subunit [EC:2.8.4.1] Tax=RBG_16_Euryarchaeota_41_19_curated
Methyl-coenzyme M reductase, beta subunit n=2 Tax=Methanosaeta harundinacea RepID=G7WN21_METH6
Methyl-coenzyme M reductase, beta subunit
RBG_16_Archaea_41_19_RBG_16_scaffold_741_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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1302..1823
DNA (522bp) protein (174aa)
Methyl-coenzyme M reductase operon protein D n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=MCRD_METBF
methyl coenzyme M reductase subunit C; K03422 methyl-coenzyme M reductase subunit D Tax=RBG_16_Euryarchaeota_41_19_curated
methyl coenzyme M reductase, subunit C
RBG_16_Archaea_41_19_RBG_16_scaffold_741_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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1879..2628
DNA (750bp) protein (250aa)
methyl-coenzyme M reductase subunit gamma; K00402 methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1] Tax=RBG_16_Euryarchaeota_41_19_curated
Methyl-coenzyme M reductase, gamma subunit n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PXH7_METMA
methyl-coenzyme M reductase subunit gamma
RBG_16_Archaea_41_19_RBG_16_scaffold_741_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2639..4345
DNA (1707bp) protein (569aa)
Methyl-coenzyme M reductase, alpha subunit n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MC35_9EURY
methyl-coenzyme M reductase, alpha subunit Tax=RBG_16_Euryarchaeota_41_19_curated
methyl-coenzyme M reductase, alpha subunit
RBG_16_Archaea_41_19_RBG_16_scaffold_741_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4603..5238)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000360FC5D
Bacterio-opsin activator HTH domain protein Tax=RBG_16_Euryarchaeota_41_19_curated
Bacterio-opsin activator HTH domain protein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5315..6199
DNA (885bp) protein (295aa)
8-oxoguanine DNA glycosylase-like protein; K03660 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=RBG_16_Euryarchaeota_41_19_curated
8-oxoguanine DNA glycosylase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WX0_METBU
8-oxoguanine DNA glycosylase-like protein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6307..6774
DNA (468bp) protein (156aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RBG_16_Archaea_41_19_RBG_16_scaffold_741_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(6846..7442)
DNA (597bp) protein (199aa)
AsnC/Lrp family transcriptional regulator n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YW62_METPS
AsnC/Lrp family transcriptional regulator Tax=RBG_16_Euryarchaeota_41_19_curated
AsnC/Lrp family transcriptional regulator
RBG_16_Archaea_41_19_RBG_16_scaffold_741_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7550..8263
DNA (714bp) protein (238aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GC34_9FIRM
4Fe-4S ferredoxin Tax=RBG_16_Euryarchaeota_41_19_curated
4Fe-4S ferredoxin
RBG_16_Archaea_41_19_RBG_16_scaffold_741_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(8317..8481)
DNA (165bp) protein (55aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RBG_16_Archaea_41_19_RBG_16_scaffold_741_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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8614..8802
DNA (189bp) protein (63aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RBG_16_Archaea_41_19_RBG_16_scaffold_741_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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8745..8876
DNA (132bp) protein (44aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RBG_16_Archaea_41_19_RBG_16_scaffold_741_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(8871..10292)
DNA (1422bp) protein (474aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RBG_16_Euryarchaeota_41_19_cu
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E8H1_METMS
RBG_16_Archaea_41_19_RBG_16_scaffold_741_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(10292..11704)
DNA (1413bp) protein (471aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KV76_METHD
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Tax=RBG_16_Euryarchaeota_41_19_curated
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
RBG_16_Archaea_41_19_RBG_16_scaffold_741_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(11705..11986)
DNA (282bp) protein (94aa)
glutamyl-tRNA(Gln) amidotransferase, C subunit; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RBG_16_Euryarchaeota_41_19_curated
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=GATC_METBU
RBG_16_Archaea_41_19_RBG_16_scaffold_741_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(11996..12370)
DNA (375bp) protein (125aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RBG_16_Archaea_41_19_RBG_16_scaffold_741_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(12388..13689)
DNA (1302bp) protein (434aa)
purD; phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RBG_16_Euryarchaeota_41_19_curated
Phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=PUR2_METAC
RBG_16_Archaea_41_19_RBG_16_scaffold_741_18
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(13780..14346)
DNA (567bp) protein (189aa)
TATA-box-binding protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IA61_METCZ
tbpE; TATA-box binding protein (TBP), component of TFIID and TFIIIB; K03120 transcription initiation factor TFIID TATA-box-binding protein Tax=RBG_16_Euryarchaeota_41_19_curated
tbpE; TATA-box binding protein (TBP), component of TFIID and TFIIIB
RBG_16_Archaea_41_19_RBG_16_scaffold_741_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(14497..14805)
DNA (309bp) protein (103aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RBG_16_Archaea_41_19_RBG_16_scaffold_741_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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14985..15932
DNA (948bp) protein (316aa)
cytoplasmic protein Tax=RBG_16_Euryarchaeota_41_19_curated
Hypothetical cytosolic protein id=4141376 bin=GWF2_Nitrospirae_44_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cytoplasmic protein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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15980..17530
DNA (1551bp) protein (517aa)
(4Fe-4S)-binding protein Tax=RBG_16_Euryarchaeota_41_19_curated
4Fe-4S binding protein id=4889234 bin=GWC2_Nitrospirae-rel_56_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
(4Fe-4S)-binding protein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(17578..18087)
DNA (510bp) protein (170aa)
Flavodoxin n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AU0_METBF
flavodoxin Tax=RBG_16_Euryarchaeota_41_19_curated
flavodoxin
RBG_16_Archaea_41_19_RBG_16_scaffold_741_23
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(18214..18972)
DNA (759bp) protein (253aa)
Iron-sulfur flavoprotein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPS0_METAC
isf-8; iron-sulfur flavoprotein Tax=RBG_16_Euryarchaeota_41_19_curated
isf-8; iron-sulfur flavoprotein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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19449..19940
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YUR5_METPS
hypothetical protein; K09713 hypothetical protein Tax=RBG_16_Euryarchaeota_41_19_curated
hypothetical protein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_25
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(19877..21238)
DNA (1362bp) protein (454aa)
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46D56_METBF
cobalt ABC transporter ATP-binding protein; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_41_19_curated
ATPase component CbiO of energizing module of cobalt ECF transporter
RBG_16_Archaea_41_19_RBG_16_scaffold_741_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(21249..22040)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. MB1 RepID=U6ED99_9EURY
cobalt ABC transporter inner membrane subunit CbiQ; K02008 cobalt/nickel transport system permease protein Tax=RBG_16_Euryarchaeota_41_19_curated
putative protein MJ1089
RBG_16_Archaea_41_19_RBG_16_scaffold_741_27
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(22037..22342)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CLX5_THEYO
cbiN; cobalt transport protein Tax=RBG_16_Euryarchaeota_41_19_curated
cbiN; cobalt transport protein
RBG_16_Archaea_41_19_RBG_16_scaffold_741_28
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(22343..23011)
DNA (669bp) protein (223aa)
Putative cobalt transport protein CbiM n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=O26233_METTH
cobalt transport protein CbiM; K02007 cobalt/nickel transport system permease protein Tax=RBG_16_Euryarchaeota_41_19_curated
Substrate-specific component CbiM of cobalt ECF transporter
RBG_16_Archaea_41_19_RBG_16_scaffold_741_29
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(23105..23611)
DNA (507bp) protein (169aa)
Transcriptional regulator, ArsR family n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMW2_METZD
ArsR family transcriptional regulator Tax=RBG_16_Euryarchaeota_41_19_curated
ArsR family transcriptional regulator
RBG_16_Archaea_41_19_RBG_16_scaffold_741_30
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(23697..24977)
DNA (1281bp) protein (427aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_16_Euryarchaeota_41_19_curated
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88) rbh
Hydroxymethylglutaryl-CoA reductase, degradative n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I942_METCZ
Displaying items 1-30 of 35 in total

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