ggKbase home page
Advanced Search
Search Help

RBG_16_Euryarchaeota_41_19_curated

RBG_16_unknown_41_19
In projects: RBG_16  |  rifle-organic-carbon-non-redundant  |  rifle_organic_carbon  |  diaphorachaeota  |  plasmids_of_methanoperedens  |  ggdb  |  archaea_ggkbase

Consensus taxonomy:

Metagenomic Context

Parent: RBG_16_UNK Manually curated genome
Original version: RBG_16_Methanoperedens_41_19 Candidate phylum (ggDB)

Properties

Avg. coverage: 19.15 Longest contig: 271.95 Kbp Bin length: 2.48 Mbp GC content: 41.11 %
Contigs count: 54 Features count: 2693 rRNAs count: 0 tRNAs count: 36

Genome completeness

near complete RP 32 / 55 MC: 2 BSCG 24 / 51 ASCG 37 / 38
Displaying items 1-50 of 54 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RBG_16_Archaea_41_19_RBG_16_scaffold_11 294 271946 bp 41.48 19.15 90.47
RBG_16_Archaea_41_19_RBG_16_scaffold_5 243 215858 bp 41.30 19.15 88.47
RBG_16_Archaea_41_19_RBG_16_scaffold_342 152 144484 bp 40.88 19.15 88.86
RBG_16_Archaea_41_19_RBG_16_scaffold_73 104 105164 bp 40.75 19.15 90.55
RBG_16_Archaea_41_19_RBG_16_scaffold_77 103 100105 bp 41.81 19.15 91.02
RBG_16_Archaea_41_19_RBG_16_scaffold_54 89 85509 bp 41.48 19.15 89.87
RBG_16_Archaea_41_19_RBG_16_scaffold_1030 86 74773 bp 41.66 19.15 91.22
RBG_16_Archaea_41_19_RBG_16_scaffold_161 78 75963 bp 40.51 19.15 84.88
RBG_16_Archaea_41_19_RBG_16_scaffold_51 76 80487 bp 41.52 19.15 89.90
RBG_16_Archaea_41_19_RBG_16_scaffold_244 73 53833 bp 41.55 19.15 81.10
RBG_16_Archaea_41_19_RBG_16_scaffold_152 70 51294 bp 40.51 19.15 91.44
RBG_16_Archaea_41_19_RBG_16_scaffold_154 63 53534 bp 39.08 19.15 87.24
RBG_16_Archaea_41_19_RBG_16_scaffold_280 62 54617 bp 41.33 19.15 92.04
RBG_16_Archaea_41_19_RBG_16_scaffold_76 61 52651 bp 41.85 19.15 89.41
RBG_16_Archaea_41_19_RBG_16_scaffold_102 53 48738 bp 40.87 19.15 88.54
RBG_16_Archaea_41_19_RBG_16_scaffold_187 51 43990 bp 40.70 19.15 91.29
RBG_16_Archaea_41_19_RBG_16_scaffold_632 51 55532 bp 38.49 19.15 91.47
RBG_16_Archaea_41_19_RBG_16_scaffold_1005 51 44564 bp 42.26 19.15 87.82
RBG_16_Archaea_41_19_RBG_16_scaffold_1041 47 44840 bp 40.97 19.15 85.43
RBG_16_Archaea_41_19_RBG_16_scaffold_139 47 44837 bp 40.25 19.15 91.50
RBG_16_Archaea_41_19_RBG_16_scaffold_329 46 49219 bp 41.82 19.15 92.03
RBG_16_Archaea_41_19_RBG_16_scaffold_2568 46 37574 bp 40.67 19.15 89.68
RBG_16_Archaea_41_19_RBG_16_scaffold_256 46 36650 bp 40.86 19.15 84.82
RBG_16_Archaea_41_19_RBG_16_scaffold_344 43 34725 bp 41.47 19.15 81.84
RBG_16_Archaea_41_19_RBG_16_scaffold_377 39 32147 bp 42.28 19.15 90.73
RBG_16_Archaea_41_19_RBG_16_scaffold_482 39 39575 bp 40.15 19.15 93.79
RBG_16_Archaea_41_19_RBG_16_scaffold_515 39 30809 bp 40.73 19.15 90.26
RBG_16_Archaea_41_19_RBG_16_scaffold_960 37 28454 bp 41.79 19.15 88.35
RBG_16_Archaea_41_19_RBG_16_scaffold_292 37 35604 bp 40.95 19.15 91.19
RBG_16_Archaea_41_19_RBG_16_scaffold_426 36 31093 bp 40.38 19.15 91.74
RBG_16_Archaea_41_19_RBG_16_scaffold_741 35 28886 bp 43.59 19.15 88.85
RBG_16_Archaea_41_19_RBG_16_scaffold_276 34 36117 bp 40.52 19.15 91.43
RBG_16_Archaea_41_19_RBG_16_scaffold_593 30 27666 bp 40.31 19.15 88.73
RBG_16_Archaea_41_19_RBG_16_scaffold_781 29 24837 bp 41.25 19.15 93.77
RBG_16_Archaea_41_19_RBG_16_scaffold_536 27 29277 bp 41.95 19.15 93.84
RBG_16_Archaea_41_19_RBG_16_scaffold_1473 26 26408 bp 39.33 19.15 87.18
RBG_16_Archaea_41_19_RBG_16_scaffold_1320 25 20214 bp 40.89 19.15 90.78
RBG_16_Archaea_41_19_RBG_16_scaffold_679 24 26342 bp 41.61 19.15 90.36
RBG_16_Archaea_41_19_RBG_16_scaffold_6434 23 15956 bp 41.85 19.15 88.84
RBG_16_Archaea_41_19_RBG_16_scaffold_2499 19 15443 bp 42.93 19.15 91.77
RBG_16_Archaea_41_19_RBG_16_scaffold_3605 19 15210 bp 39.15 19.15 92.45
RBG_16_Archaea_41_19_RBG_16_scaffold_7848 16 24570 bp 41.11 19.15 92.28
RBG_16_Archaea_41_19_RBG_16_scaffold_3395 16 13428 bp 41.67 19.15 86.51
RBG_16_Archaea_41_19_RBG_16_scaffold_7917 15 16366 bp 40.88 19.15 92.95
RBG_16_Archaea_41_19_RBG_16_scaffold_3188 14 15209 bp 41.97 19.15 86.06
RBG_16_Archaea_41_19_RBG_16_scaffold_2893 12 14804 bp 43.92 19.15 87.40
RBG_16_Archaea_41_19_RBG_16_scaffold_19551 11 5975 bp 40.44 19.15 82.85
RBG_16_Archaea_41_19_RBG_16_scaffold_7034 10 9525 bp 40.61 19.15 89.18
RBG_16_Archaea_41_19_RBG_16_scaffold_13558 10 11288 bp 41.70 19.15 70.22
RBG_16_Archaea_41_19_RBG_16_scaffold_3516 9 13215 bp 38.68 19.15 92.83
Displaying items 1-50 of 54 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.