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RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_1
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2..1144)
-----------------
DNA (1143bp)
protein (381aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5803331 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
preprotein translocase subunit SecY
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_2
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1126..1542)
-----------------
DNA (417bp)
protein (139aa)
rplO; Ribosomal protein L15
50S ribosomal protein L15 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L15 id=2824223 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_3
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1544..2050)
-----------------
DNA (507bp)
protein (169aa)
30S ribosomal protein S5 n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036A7D71
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rpsE; 30S ribosomal protein S5
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_4
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2056..2388)
-----------------
DNA (333bp)
protein (111aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L18 id=4219011 bin=GWF2_OP3_43_52 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
50S ribosomal protein L18
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_5
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2400..2945)
-----------------
DNA (546bp)
protein (182aa)
50S ribosomal protein L6 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371A5D4
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rplF; 50S ribosomal protein L6
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_6
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2950..3339)
-----------------
DNA (390bp)
protein (130aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
30S ribosomal protein S8 id=2824239 bin=GWC1_OD1_38_17 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpsH; 30S ribosomal protein S8
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_7
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(3533..4066)
-----------------
DNA (534bp)
protein (178aa)
50S ribosomal protein L5 n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036A0E58
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L5
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_8
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4069..4383)
-----------------
DNA (315bp)
protein (105aa)
50S ribosomal protein L24 n=2 Tax=Mesotoga RepID=I2F3A2_9THEM
50S ribosomal protein L24 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L24
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_9
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4385..4750)
-----------------
DNA (366bp)
protein (122aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L14 id=3736637 bin=GWC2_OD1_43_27 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
rplN; 50S ribosomal protein L14
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_10
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4747..4989)
-----------------
DNA (243bp)
protein (81aa)
30S ribosomal protein S17 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LSU4_TEPAE
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rpsQ; ribosomal protein S17 (BS16)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_11
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(4976..5173)
-----------------
DNA (198bp)
protein (66aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(5176..5589)
-----------------
DNA (414bp)
protein (138aa)
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L16 id=2824327 bin=GWC1_OD1_38_17 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rplP; 50S ribosomal protein L16
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_13
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(5592..6263)
-----------------
DNA (672bp)
protein (224aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GVZ4_9ZZZZ
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rpsC; 30S ribosomal protein S3
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_14
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6265..6600)
-----------------
DNA (336bp)
protein (112aa)
50S ribosomal protein L22 n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F4W7_DESDL
50S ribosomal protein L22 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L22
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_15
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6603..6923)
-----------------
DNA (321bp)
protein (107aa)
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=89130 bin=ACD5 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=ACD5 organism_group=OD1-i organism_desc=OD1-i
30S ribosomal protein S19
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_16
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6925..7752)
-----------------
DNA (828bp)
protein (276aa)
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L2, plastid id=5227350 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rplB; 50S ribosomal protein L2
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_17
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(7749..8015)
-----------------
DNA (267bp)
protein (89aa)
50S ribosomal protein L23 n=1 Tax=Pelagibacter ubique RepID=UPI0003B42D2F
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rplW; 50S ribosomal protein L23
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_18
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(8019..8648)
-----------------
DNA (630bp)
protein (210aa)
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=5227352 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L4
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_19
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(8653..9264)
-----------------
DNA (612bp)
protein (204aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rplC; Ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5802993 bin=OD1_GWC2_34_28 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rplC; 50S ribosomal protein L3
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_20
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(9341..9682)
-----------------
DNA (342bp)
protein (114aa)
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
30S ribosomal protein S10 id=2824346 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
30S ribosomal protein S10
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_15753_21
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(9697..10887)
-----------------
DNA (1191bp)
protein (397aa)
translation elongation factor Tu Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Elongation factor Tu id=2824349 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
translation elongation factor Tu
Displaying 21 items

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