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rifcsplowo2_01_scaffold_4556

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_4556_1

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275..2275
-----------------
DNA (2001bp)
protein (667aa)
chd:Calhy_2106 anaerobic ribonucleoside-triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] id=95921 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Uncharacterized protein {ECO:0000313|EMBL:EKD49256.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rifcsplowo2_01_scaffold_4556_2
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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2319..2456
-----------------
DNA (138bp)
protein (46aa)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RAP6_9DELT
Anaerobic ribonucleoside-triphosphate reductase
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CCO23287.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovib
rifcsplowo2_01_scaffold_4556_3
GWE2_Clostridiales_32_10_curated, Clostridiales, Bacteria

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2473..3171
-----------------
DNA (699bp)
protein (233aa)
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4) Tax=GWE2_Clostridiales_32_10_curated
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase activating protein id=2117155 bin=GWE2_Clostridiales_32_10 species=Butyrivibrio fibrisolvens genus=Butyrivibrio taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
rifcsplowo2_01_scaffold_4556_4

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3189..3653
-----------------
DNA (465bp)
protein (155aa)
hypothetical protein
hypothetical protein id=5241303 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60294.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_4556_5
GWA2_OD1_rel_E2_38_254_42_10, Wolfebacteria, Parcubacteria, Bacteria

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3650..3937
-----------------
DNA (288bp)
protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS25526.1}; TaxID=1619004 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWA2_42_10.;"
transmembrane_regions 2..19 id=53219 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rifcsplowo2_01_scaffold_4556_6
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(4386..4961)
-----------------
DNA (576bp)
protein (192aa)
RNA polymerase insert n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIN8_9EURY
RNA polymerase insert {ECO:0000313|EMBL:EET89812.1}; TaxID=425595 species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
DNA-directed RNA polymerase subunit D
rifcsplowo2_01_scaffold_4556_7
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(4993..5409)
-----------------
DNA (417bp)
protein (139aa)
30S ribosomal protein S11 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=A0SNY7_9EURY
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=425595 species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
30S ribosomal protein S11
rifcsplowo2_01_scaffold_4556_8
CG_Micra_05, Micraarchaeota, Archaea

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comp(5409..6002)
-----------------
DNA (594bp)
protein (198aa)
30S ribosomal protein S4 n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RS4_THEKO
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=CG_Micra_05
rps4p; 30S ribosomal protein S4
rifcsplowo2_01_scaffold_4556_9
CG_Micra_05, Micraarchaeota, Archaea

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comp(6014..6649)
-----------------
DNA (636bp)
protein (212aa)
Ribosomal protein S13 n=1 Tax=mine drainage metagenome RepID=T1AVF8_9ZZZZ
rps13p; 30S ribosomal protein S13p Tax=CG_Micra_05
rpsM; ribosomal protein S13p/S18e
rifcsplowo2_01_scaffold_4556_10
CG_Micra_05, Micraarchaeota, Archaea

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comp(6660..6920)
-----------------
DNA (261bp)
protein (87aa)
Elongation factor 1-beta n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0MNT1_9EURY
translation elongation factor 1B (aEF-1B) Tax=CG_Micra_05
translation elongation factor 1B (aEF-1B); K03232 elongation factor 1-beta
rifcsplowo2_01_scaffold_4556_11
CG_Micra_05, Micraarchaeota, Archaea

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7405..8601
-----------------
DNA (1197bp)
protein (399aa)
Cell division protein FtsZ n=1 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S4S2_METSF
cell division protein FtsZ 1 Tax=CG_Micra_05
cell division protein
rifcsplowo2_01_scaffold_4556_12

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8611..8775
-----------------
DNA (165bp)
protein (55aa)
Protein translocase subunit SecE n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXB2_METFV
Uncharacterized protein {ECO:0000313|EMBL:AIF00793.1}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_C07.;"
protein translocase subunit sece/sec61 gamma; K07342 protein transport protein SEC61 subunit gamma and related proteins
rifcsplowo2_01_scaffold_4556_13
CG_Micra_05, Micraarchaeota, Archaea

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8789..9235
-----------------
DNA (447bp)
protein (149aa)
Transcription elongation factor Spt5 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HM74_PYRSN
50S ribosomal protein L24a; K02601 transcriptional antiterminator NusG Tax=CG_Micra_05
transcription antitermination protein NusG
rifcsplowo2_01_scaffold_4556_14
unknown

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comp(9238..11520)
-----------------
DNA (2283bp)
protein (761aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4556_15
Mycoplasma sp. CAG:776, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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11641..12561
-----------------
DNA (921bp)
protein (307aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262906 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; envir
tRNA-dihydrouridine synthase n=1 Tax=Mycoplasma sp. CAG:776 RepID=R7NFQ8_9MOLU
hypothetical protein
rifcsplowo2_01_scaffold_4556_16
RBG_16_OP11_43_9_curated, Microgenomates, Bacteria

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comp(12541..13779)
-----------------
DNA (1239bp)
protein (413aa)
glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RBG_16_OP11_43_9_curated
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JIN0_FUSVA
rifcsplowo2_01_scaffold_4556_17
GWB1_OD1_46_27, Azambacteria, Parcubacteria, Bacteria

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14428..15579
-----------------
DNA (1152bp)
protein (384aa)
hypothetical protein, partial n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI0003738609
Putative tRNA sulfurtransferase {ECO:0000313|EMBL:KKU34905.1}; TaxID=1618617 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWB1_46_27.;"
thiamine biosynthesis/tRNA modification protein ThiI
rifcsplowo2_01_scaffold_4556_18
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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comp(15560..16393)
-----------------
DNA (834bp)
protein (278aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseud
Probable tRNA pseudouridine synthase B n=2 Tax=Caldivirga maquilingensis RepID=A8MA72_CALMQ
H/ACA RNA-protein complex component Cbf5p
rifcsplowo2_01_scaffold_4556_19
CG_Micra_05, Micraarchaeota, Archaea

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comp(16404..16922)
-----------------
DNA (519bp)
protein (173aa)
Cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=CG_Micra_05
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=KCY_SULTO
rifcsplowo2_01_scaffold_4556_20
CG_Micra_02, Micraarchaeota, Archaea

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comp(16984..17811)
-----------------
DNA (828bp)
protein (276aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7J2_METSW
hypothetical protein
Tax=CG_Micra_02
rifcsplowo2_01_scaffold_4556_21
unknown

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17846..18466
-----------------
DNA (621bp)
protein (207aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4556_22
CG_Micra_04, Micraarchaeota, Archaea

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18504..18968
-----------------
DNA (465bp)
protein (155aa)
30S ribosomal protein S12 n=1 Tax=nanoarchaeote Nst1 RepID=R1G2B2_9ARCH
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=CG_Micra_04
rps12P; 30S ribosomal protein S12
rifcsplowo2_01_scaffold_4556_23
CG_Micra_06, Micraarchaeota, Archaea

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18973..19578
-----------------
DNA (606bp)
protein (202aa)
Ribosomal protein S7 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI39_9EURY
30S ribosomal protein S5e (S7p); K02992 small subunit ribosomal protein S7 Tax=CG_Micra_06
30S ribosomal protein S7
rifcsplowo2_01_scaffold_4556_24
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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19707..20891
-----------------
DNA (1185bp)
protein (395aa)
NhaP-type Na/H and K/H antiporter; K11105 cell volume regulation protein A Tax=RBG_13_Bathyarchaeota_46_16b_curated
sodium/hydrogen exchanger id=18248502 bin=AR5_curated_draft species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Sodium/hydrogen exchanger
Displaying 24 items

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