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SCNpilot_cont_500_bf_scaffold_871

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_871_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..1435)
DNA (1254bp) protein (418aa)
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW1_9GAMM rbh
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:EIL88902.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
polyhydroxyalkanoate depolymerase, intracellular rbh
SCNpilot_cont_500_bf_scaffold_871_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1647..2663
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUT7_THIA3 rbh
hypothetical protein rbh
Transcription factor jumonji {ECO:0000313|EMBL:CDW92267.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
SCNpilot_cont_500_bf_scaffold_871_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2673..3191)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSK5_9GAMM
putative membrane protein/domain protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_871_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3199..4116
DNA (918bp) protein (306aa)
Tyrosine recombinase XerD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC0_9GAMM rbh
tyrosine recombinase XerD rbh
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_871_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4194..5000
DNA (807bp) protein (269aa)
Protein-disulfide isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB9_9GAMM rbh
protein-disulfide isomerase rbh
Protein-disulfide isomerase {ECO:0000313|EMBL:AGG87917.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_871_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5134..9006
DNA (3873bp) protein (1291aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodan
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3) rbh
Phosphoribosylformylglycinamidine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW6_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_871_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8964..9743
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88908.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_871_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9813..10688
DNA (876bp) protein (292aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW8_9GAMM rbh
Putative glycosyltransferase {ECO:0000313|EMBL:EIL88909.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative glycosyltransferase rbh
SCNpilot_cont_500_bf_scaffold_871_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10747..11643
DNA (897bp) protein (299aa)
Putative permease, DMT superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB5_9GAMM rbh
Putative permease, DMT superfamily protein {ECO:0000313|EMBL:EIL99556.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease, DMT superfamily rbh
SCNpilot_cont_500_bf_scaffold_871_10
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11867..12253)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PBD3_9BURK
Glyoxalase {ECO:0000313|EMBL:KGM55578.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
glyoxalase family protein
SCNpilot_cont_500_bf_scaffold_871_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12370..12909)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88912.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_871_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13044..13244)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88913.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized small protein
SCNpilot_cont_500_bf_scaffold_871_13
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13249..15249)
DNA (2001bp) protein (667aa)
Carbon starvation protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX3_9GAMM
Carbon starvation protein A {ECO:0000313|EMBL:EAU66532.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
cstA; carbon starvation protein
SCNpilot_cont_500_bf_scaffold_871_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15512..16048
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
peptide deformylase n=1 Tax=Dyella japonica RepID=UPI00030BC428 rbh
peptide deformylase rbh
SCNpilot_cont_500_bf_scaffold_871_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16530..17690
DNA (1161bp) protein (387aa)
Putative acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJG0_9GAMM rbh
putative acyltransferase rbh
Putative acyltransferase {ECO:0000313|EMBL:AGG87931.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_871_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17707..18399)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034937B3
Uncharacterized protein {ECO:0000313|EMBL:KGI78028.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_cont_500_bf_scaffold_871_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18433..19509)
DNA (1077bp) protein (359aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uroporphyrinogen decarboxylase (EC:4.1.1.37) rbh
Uroporphyrinogen decarboxylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAY2_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_871_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19511..19771)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90121.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_871_19
Streptomyces coelicoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19892..20497)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Streptomyces coelicoflavus ZG0656 RepID=H1QSC9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EHN72664.1}; TaxID=1120227 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces coelicoflavus ZG0656.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_871_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20612..21709)
DNA (1098bp) protein (366aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-dehydroquinate synthase (EC:4.2.3.4) rbh
3-dehydroquinate synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAY4_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_871_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21706..22260)
DNA (555bp) protein (185aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ54_9GAMM
SCNpilot_cont_500_bf_scaffold_871_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22430..23263
DNA (834bp) protein (278aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDQ4_9GAMM rbh
nucleoside-diphosphate-sugar epimerase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_871_23

Not on your lists

23296..23643
DNA (348bp) protein (116aa)
Protein belonging to Uncharacterized protein family UPF0145 n=1 Tax=mine drainage metagenome RepID=T1ANG1_9ZZZZ
Protein belonging to Uncharacterized protein family UPF0145 {ECO:0000313|EMBL:EQD43585.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_871_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23660..24499)
DNA (840bp) protein (280aa)
Putative kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJJ3_9GAMM
putative kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_871_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24636..25223
DNA (588bp) protein (196aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZK7_9GAMM
SCNpilot_cont_500_bf_scaffold_871_26
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25290..26966)
DNA (1677bp) protein (559aa)
betA; choline dehydrogenase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1] rbh
Oxygen-dependent choline dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00750}; Short=CDH {ECO:0000255|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000255|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000255|HAMAP-Rule:MF_00750};; Betaine aldehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00750}; Short=BADH {ECO:0000255|HAMAP-Rule:MF_00750};; EC=1.2.1.8 {ECO:0000255|HAMAP-Rule:MF_00750};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas
Oxygen-dependent choline dehydrogenase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=BETA_STRMK rbh
SCNpilot_cont_500_bf_scaffold_871_27
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27023..28495)
DNA (1473bp) protein (491aa)
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
betB; Betaine aldehyde dehydrogenase (EC:1.2.1.8) rbh
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L8E9_STEMA rbh
SCNpilot_cont_500_bf_scaffold_871_28
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28524..29114)
DNA (591bp) protein (197aa)
HTH-type transcriptional regulator BetI n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KNC4_STEMA
betI; HTH-type transcriptional regulator BetI; K02167 TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_cont_500_bf_scaffold_871_29
Serratia plymuthica, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29415..30932
DNA (1518bp) protein (506aa)
Choline/carnitine/betaine transporter n=1 Tax=Serratia plymuthica A30 RepID=L0VUL3_SERPL rbh
betT; high-affinity choline transport protein BetT rbh
High-affinity choline transport protein BetT {ECO:0000313|EMBL:AGO56765.1}; TaxID=682634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia plymuthica 4Rx13.;"
SCNpilot_cont_500_bf_scaffold_871_30
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30929..31717
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036D3374 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJC45883.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
Displaying items 1-30 of 60 in total

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