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SCNpilot_cont_500_bf_scaffold_4809

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4809_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..507)
DNA (507bp) protein (169aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] rbh
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
ubiquinol-cytochrome C reductase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00036A73A9 rbh
SCNpilot_cont_500_bf_scaffold_4809_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(680..1588)
DNA (909bp) protein (303aa)
Soluble lytic murein transglycosylase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L2U6_9GAMM rbh
Transglycosylase {ECO:0000313|EMBL:AHY59579.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
lytic transglycosylase rbh
SCNpilot_cont_500_bf_scaffold_4809_3
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1874..2134)
DNA (261bp) protein (87aa)
Tax=GWE2_Gallionellales_58_10_curated
SCNpilot_cont_500_bf_scaffold_4809_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2979..3173
DNA (195bp) protein (65aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TNK2_STEMA
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_cont_500_bf_scaffold_4809_5
unknown

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3752..4198
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Acinetobacter calcoaceticus RepID=UPI0002FCD21A
SCNpilot_cont_500_bf_scaffold_4809_6
unknown

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4198..4623
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4809_7
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4658..5746)
DNA (1089bp) protein (363aa)
ABC-type multidrug transport system, permease component n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3EQL8_STEMA rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
ABC transporter; K09686 antibiotic transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_4809_8
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5743..6690)
DNA (948bp) protein (316aa)
ABC transporter ATP-binding protein, partial n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036351DF rbh
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_500_bf_scaffold_4809_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6690..7667)
DNA (978bp) protein (326aa)
Hemolysin D n=1 Tax=Rhodanobacter denitrificans RepID=I4WYF3_9GAMM
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGG90025.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_4809_10
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7660..8403)
DNA (744bp) protein (248aa)
Regulatory protein TetR n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0D2_9GAMM
TetR family transcriptional regulator {ECO:0000313|EMBL:KGM53481.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4809_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8527..9567
DNA (1041bp) protein (347aa)
ATP-binding protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E53CCD rbh
PhoH {ECO:0000313|EMBL:AHY59595.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins rbh
SCNpilot_cont_500_bf_scaffold_4809_12
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9656..10093
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262ADD6
Uncharacterized protein {ECO:0000313|EMBL:KHS08379.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4809_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10150..10635
DNA (486bp) protein (162aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
Endoribonuclease YbeY n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CXK6_STEMA rbh
putative metalloprotease; K07042 probable rRNA maturation factor rbh
SCNpilot_cont_500_bf_scaffold_4809_14
unknown

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comp(10670..10747)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 14 items

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