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SCNpilot_cont_500_bf_scaffold_4259

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4259_1
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..292
DNA (291bp) protein (97aa)
PAS sensor protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000361C4E3
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL48963.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
diguanylate cyclase
SCNpilot_cont_500_bf_scaffold_4259_2
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(299..691)
DNA (393bp) protein (131aa)
Endoribonuclease L-PSP n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X420_OCHA4
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABS15974.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_4259_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(791..1837)
DNA (1047bp) protein (349aa)
3-carboxy-cis,cis-muconate cycloisomerase (EC:5.5.1.2); K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] rbh
PREDICTED: uncharacterized protein C8E4.05c-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18C28 rbh
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:EPR19410.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_cont_500_bf_scaffold_4259_4
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1846..2466)
DNA (621bp) protein (207aa)
protocatechuate 3,4-dioxygenase subunit alpha (EC:1.13.11.3); K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] rbh
Protocatechuate 3,4-dioxygenase, alpha chain n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LB13_AGRSH rbh
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KJF67236.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_cont_500_bf_scaffold_4259_5
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2466..3206)
DNA (741bp) protein (247aa)
pcaH; protocatechuate 3,4-dioxygenase beta subunit; K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] rbh
Protocatechuate 3,4-dioxygenase beta subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2N1_AGRVS rbh
Protocatechuate 3,4-dioxygenase beta subunit {ECO:0000313|EMBL:ACM39129.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_4259_6
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3203..3607)
DNA (405bp) protein (135aa)
pcaC; 4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
4-carboxymuconolactone decarboxylase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2N0_AGRVS
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:GAK69776.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCNpilot_cont_500_bf_scaffold_4259_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3612..4406)
DNA (795bp) protein (265aa)
3-oxoadipate enol-lactonase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XU91_RHIRD rbh
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:KDR88912.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
3-oxoadipate enol-lactonase rbh
SCNpilot_cont_500_bf_scaffold_4259_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4453..5613)
DNA (1161bp) protein (387aa)
pobA; 4-hydroxybenzoate 3-monooxygenase; K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2M7_AGRVS
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:ACM39125.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_4259_9
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5730..6608
DNA (879bp) protein (293aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q8C0_9RHIZ rbh
DNA-binding domain-containing protein, AraC-type rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:CDI10006.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_cont_500_bf_scaffold_4259_10
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6667..7431)
DNA (765bp) protein (255aa)
short chain dehydrogenase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037D30A4 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KGJ04642.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCNpilot_cont_500_bf_scaffold_4259_11
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7435..8685)
DNA (1251bp) protein (417aa)
fuconate dehydratase n=1 Tax=Meganema perideroedes RepID=UPI00037FFC46 rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EIM77467.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
putative mandelate racemase/muconate-lactonizing protein rbh
Displaying 11 items

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