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SCNpilot_cont_500_bf_scaffold_7124

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_7124_1
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..822)
DNA (822bp) protein (274aa)
Ferrichrome transport system permease protein FhuB n=1 Tax=Pseudomonas fluorescens WH6 RepID=E2XU40_PSEFL
Ferrichrome transport system permease protein FhuB {ECO:0000313|EMBL:EFQ62469.1}; TaxID=746360 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens WH6.;"
ABC-type Fe3+-siderophore transport system, permease component
SCNpilot_cont_500_bf_scaffold_7124_2
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(893..1783)
DNA (891bp) protein (297aa)
Iron(III)-siderophore-binding periplasmic protein n=2 Tax=Azotobacter vinelandii RepID=C1DLD0_AZOVD
fhuD; iron(III)-siderophore-binding periplasmic protein
Iron(III)-siderophore-binding periplasmic protein {ECO:0000313|EMBL:ACO81123.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
SCNpilot_cont_500_bf_scaffold_7124_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1780..4215)
DNA (2436bp) protein (812aa)
TonB-dependent siderophore receptor n=1 Tax=Rhizobium sp. AP16 RepID=J2W8A8_9RHIZ
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJK78870.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
fhuA; ferrichrome-iron transporter; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_500_bf_scaffold_7124_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4363..4743)
DNA (381bp) protein (127aa)
Probable FecR, iron siderophore sensor protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X079_9BRAD
Probable FecR, iron siderophore sensor protein {ECO:0000313|EMBL:EAQ34361.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
FecR, iron siderophore sensor protein; K07165 transmembrane sensor
SCNpilot_cont_500_bf_scaffold_7124_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4745..5248)
DNA (504bp) protein (168aa)
Probable FecR, iron siderophore sensor protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQY3_NITWN
Iron dicitrate transport regulator FecR {ECO:0000313|EMBL:KAJ32841.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
FecR, iron siderophore sensor protein; K07165 transmembrane sensor
SCNpilot_cont_500_bf_scaffold_7124_6
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5332..5859)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XHG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERI14360.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
fecI; FecI-like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_7124_7
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6257..7123)
DNA (867bp) protein (289aa)
Transcriptional regulator n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Y3J4_9PROT
Chromosome initiation inhibitor {ECO:0000313|EMBL:KIL98024.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_7124_8
Marinomonas ushuaiensis, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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7379..8491
DNA (1113bp) protein (371aa)
proV; glycine betaine/L-proline ABC transporter ATPase; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/L-proline ABC transporter ATPase n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F3U4K7_RHOSH
Glycine/betaine ABC transporter {ECO:0000313|EMBL:ETX12525.1}; TaxID=1122207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas ushuaiensis DSM 15871.;"
SCNpilot_cont_500_bf_scaffold_7124_9
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8488..9723
DNA (1236bp) protein (412aa)
opuAA2; glycine betaine transport ATP-binding protein OpuAA (EC:3.6.3.32) rbh
Glycine betaine transport ATP-binding protein OpuAA n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RF80_9PSED rbh
Putative ABC transporter, quaternary amine uptake transporter (QAT) family, ATPase/permease fusion protein {ECO:0000313|EMBL:AAY91826.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
SCNpilot_cont_500_bf_scaffold_7124_10
Marinomonas ushuaiensis, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9757..10698
DNA (942bp) protein (314aa)
ABC-type proline/glycine betaine transport system, periplasmic component n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZYB3_9PROT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETX12527.1}; TaxID=1122207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas ushuaiensis DSM 15871.;"
glycine betaine ABC transporter substrate binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_7124_11
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10774..11808
DNA (1035bp) protein (345aa)
Putative oxidoreductase n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AF26_PSERE
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAN48447.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_cont_500_bf_scaffold_7124_12
unknown

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comp(11836..12027)
DNA (192bp) protein (64aa)

This feature has no annotations

Displaying 12 items

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