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SCNpilot_cont_500_bf_scaffold_9620

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_9620_1
unknown

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2..121
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_9620_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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123..944
DNA (822bp) protein (274aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3P5_9RHIZ
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
SCNpilot_cont_500_bf_scaffold_9620_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1266..2621
DNA (1356bp) protein (452aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
NADP-specific glutamate dehydrogenase Gdh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW77_9RHIZ rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_9620_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2805..3512
DNA (708bp) protein (236aa)
Putative branched-chain amino acid permease (Azaleucine resistance) n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NLF4_RHILT
Putative branched-chain amino acid permease (Azaleucine resistance) {ECO:0000313|EMBL:EJB07627.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
branched-chain amino acid permease (azaleucine resistance) protein
SCNpilot_cont_500_bf_scaffold_9620_5
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3509..3817
DNA (309bp) protein (103aa)
Branched-chain amino acid transport n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6L9_9RHIZ
Branched-chain amino acid transport {ECO:0000313|EMBL:EHS51583.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_9620_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3860..4525)
DNA (666bp) protein (222aa)
aminopeptidase; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
X-Pro aminopeptidase n=1 Tax=Rhizobium mongolense RepID=UPI0003B71D3D
X-Pro aminopeptidase {ECO:0000313|EMBL:AHF84822.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_cont_500_bf_scaffold_9620_7
unknown

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4949..5188
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_9620_8
unknown

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5128..5424
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_9620_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5307..5567)
DNA (261bp) protein (87aa)
Aminopeptidase P-like protein {ECO:0000313|EMBL:EYR77769.1}; EC=3.4.11.9 {ECO:0000313|EMBL:EYR77769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Xaa-Pro aminopeptidase (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Xaa-Pro aminopeptidase n=1 Tax=Rhizobium sp. CF142 RepID=J2B3L8_9RHIZ
SCNpilot_cont_500_bf_scaffold_9620_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6059..6937)
DNA (879bp) protein (293aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
prmA; ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
ribosomal protein L11 methyltransferase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037E909F
SCNpilot_cont_500_bf_scaffold_9620_11
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7041..7670)
DNA (630bp) protein (210aa)
Sco copper chaperone family protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003728A03 rbh
Putative Sco copper chaperone family protein {ECO:0000313|EMBL:CCM77006.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
electron transport protein SCO1/SenC; K07152 rbh
SCNpilot_cont_500_bf_scaffold_9620_12
unknown

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comp(8516..8956)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_9620_13
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8922..9647)
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JSB8_BURP1
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_500_bf_scaffold_9620_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9712..10176
DNA (465bp) protein (155aa)
Chemotaxis protein CheW n=2 Tax=Rhizobium fredii RepID=G9A899_RHIFH
putative chemotaxis protein; K03408 purine-binding chemotaxis protein CheW
Chemotaxis protein CheW {ECO:0000313|EMBL:CCE96479.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_500_bf_scaffold_9620_15
unknown

Not on your lists

10368..10781
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_9620_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11045..11629)
DNA (585bp) protein (195aa)
CREA protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B2E5CA
CreA family protein; K05805 CreA protein
Uncharacterized protein {ECO:0000313|EMBL:EJC75691.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_cont_500_bf_scaffold_9620_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11598..13022)
DNA (1425bp) protein (475aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A244_RHIET
SCNpilot_cont_500_bf_scaffold_9620_18
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13076..13711)
DNA (636bp) protein (212aa)
DNA ligase {ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|RuleBase:RU000618};; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0VKT6_9RHIZ
SCNpilot_cont_500_bf_scaffold_9620_19
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13822..15495)
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Rhizobium sp. AP16 RepID=J2L4F2_9RHIZ
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_cont_500_bf_scaffold_9620_20
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15510..15983)
DNA (474bp) protein (158aa)
Outer membrane protein assembly factor BamD n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5Q5G3_9RHIZ
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
comL; competence lipoprotein; K05807 putative lipoprotein
Displaying 20 items

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