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SCNpilot_cont_500_bf_scaffold_13992

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_13992_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..135)
DNA (135bp) protein (45aa)
ABC transporter, permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUF1_9RHIZ
ABC transporter, permease protein {ECO:0000313|EMBL:EYR79314.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type spermidine/putrescine transport system, permease component II
SCNpilot_cont_500_bf_scaffold_13992_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(140..652)
DNA (513bp) protein (171aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEH3_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79313.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_cont_500_bf_scaffold_13992_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(661..954)
DNA (294bp) protein (98aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEH3_9RHIZ
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79313.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_cont_500_bf_scaffold_13992_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1069..2139)
DNA (1071bp) protein (357aa)
ABC transporter, binding protein component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVW3_9RHIZ rbh
ABC transporter, binding protein component {ECO:0000313|EMBL:EYR79312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter binding protein component; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_13992_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2186..2803)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYQ3_9RHIZ rbh
Transcriptional regulator XRE family {ECO:0000313|EMBL:EYR79311.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cupin
SCNpilot_cont_500_bf_scaffold_13992_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2955..3203
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000364F946
Uncharacterized protein {ECO:0000313|EMBL:CDN94620.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_13992_7
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3220..4035
DNA (816bp) protein (272aa)
DNA helicase n=1 Tax=Rhizobium leguminosarum RepID=UPI000380FF61
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
putative DNA repair protein
SCNpilot_cont_500_bf_scaffold_13992_8
unknown

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4039..4155
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_13992_9
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4149..6119
DNA (1971bp) protein (657aa)
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:KIV67229.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KIV67229.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XUH1_RHIRD
Displaying 9 items

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