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SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

SCNPILOT_EXPT_1000_BF_Sphingomonas_67_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 51-100 of 416 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_6044
Species: Sphingobium sp. AP49 (50%)
4 5363 bp 62.73 4.66 90.84
SCNpilot_expt_1000_bf_scaffold_15745
Order: Sphingomonadales (50%)
4 2993 bp 67.49 4.68 99.13
SCNpilot_expt_1000_bf_scaffold_11394
Species: Sphingomonas sp. WHSC-8 (55.56%)
9 6566 bp 66.83 4.68 86.13
SCNpilot_expt_1000_bf_scaffold_25450
Species: Sphingobium yanoikuyae (66.67%)
3 1711 bp 56.69 4.68 74.17
SCNpilot_expt_1000_bf_scaffold_18643
Species: Sphingomonas sp. WHSC-8 (80%)
5 6386 bp 63.33 4.70 77.18
SCNpilot_expt_1000_bf_scaffold_41573
Class: Alphaproteobacteria (66.67%)
3 2555 bp 65.44 4.70 75.03
SCNpilot_expt_1000_bf_scaffold_36445
Species: Sphingomonas sp. WHSC-8 (100%)
2 1270 bp 67.80 4.72 99.21
SCNpilot_expt_1000_bf_scaffold_7087
Order: Sphingomonadales (60%)
10 6739 bp 63.17 4.75 93.80
SCNpilot_expt_1000_bf_scaffold_18064
Species: Sphingobium baderi (80%)
5 3470 bp 61.79 4.76 79.37
SCNpilot_expt_1000_bf_scaffold_8927
Order: Sphingomonadales (50%)
8 8066 bp 57.60 4.77 93.39
SCNpilot_expt_1000_bf_scaffold_26585
Class: Alphaproteobacteria (50%)
4 2502 bp 63.23 4.80 80.10
SCNpilot_expt_1000_bf_scaffold_13594
Class: Alphaproteobacteria (81.82%)
11 6712 bp 61.86 4.80 92.88
SCNpilot_expt_1000_bf_scaffold_15192
Order: Sphingomonadales (50%)
10 6821 bp 63.76 4.80 63.55
SCNpilot_expt_1000_bf_scaffold_5850
Phylum: Proteobacteria (71.43%)
7 6868 bp 66.44 4.80 93.08
SCNpilot_expt_1000_bf_scaffold_35376
Species: Sphingomonas sp. WHSC-8 (100%)
1 1300 bp 66.08 4.81 99.92
SCNpilot_expt_1000_bf_scaffold_3079
Order: Sphingomonadales (64.29%)
14 12621 bp 63.36 4.83 91.75
SCNpilot_expt_1000_bf_scaffold_11230
Phylum: Proteobacteria (60%)
5 5623 bp 59.79 4.85 88.62
SCNpilot_expt_1000_bf_scaffold_10287
Species: Sphingopyxis fribergensis (60%)
10 6401 bp 62.35 4.88 90.22
SCNpilot_expt_1000_bf_scaffold_13493
Species: Sphingomonas sp. WHSC-8 (66.67%)
6 4562 bp 60.04 4.88 80.49
SCNpilot_expt_1000_bf_scaffold_8481
Genus: Sphingomonas (66.67%)
3 4176 bp 67.72 4.91 91.95
SCNpilot_expt_1000_bf_scaffold_5633
Species: Sphingomonas sp. WHSC-8 (50%)
10 7744 bp 64.19 4.91 84.26
SCNpilot_expt_1000_bf_scaffold_18477
Species: Sphingobium baderi (66.67%)
3 2241 bp 63.28 4.91 92.91
SCNpilot_expt_1000_bf_scaffold_10519
Species: Sphingomonas sp. WHSC-8 (80%)
5 3546 bp 68.92 4.94 96.79
SCNpilot_expt_1000_bf_scaffold_2780
Species: Sphingomonas sp. WHSC-8 (88.89%)
9 11597 bp 66.83 4.94 91.16
SCNpilot_expt_1000_bf_scaffold_24543 5 5262 bp 59.10 4.94 60.49
SCNpilot_expt_1000_bf_scaffold_36585 1 1265 bp 65.69 4.94 63.08
SCNpilot_expt_1000_bf_scaffold_16782
Species: Sphingomonas sp. WHSC-8 (66.67%)
3 2431 bp 66.23 4.94 97.74
SCNpilot_expt_1000_bf_scaffold_5772
Order: Sphingomonadales (57.14%)
7 7071 bp 60.87 4.95 70.60
SCNpilot_expt_1000_bf_scaffold_7341
Genus: Sphingomonas (55.56%)
9 9215 bp 63.26 4.96 83.54
SCNpilot_expt_1000_bf_scaffold_20873
Species: Sphingomonas sp. WHSC-8 (80%)
5 3380 bp 64.97 4.96 64.88
SCNpilot_expt_1000_bf_scaffold_4231
Class: Alphaproteobacteria (66.67%)
6 7411 bp 60.11 4.99 66.23
SCNpilot_expt_1000_bf_scaffold_4192
Order: Sphingomonadales (71.43%)
14 12464 bp 63.46 5.03 93.92
SCNpilot_expt_1000_bf_scaffold_17613
Class: Alphaproteobacteria (50%)
4 4205 bp 66.66 5.05 73.63
SCNpilot_expt_1000_bf_scaffold_9734
Species: Sphingobium baderi (75%)
8 9721 bp 64.93 5.07 76.78
SCNpilot_expt_1000_bf_scaffold_51065
Class: Alphaproteobacteria (50%)
4 2951 bp 64.35 5.08 69.03
SCNpilot_expt_1000_bf_scaffold_4890
Order: Sphingomonadales (53.85%)
13 13477 bp 60.38 5.08 81.52
SCNpilot_expt_1000_bf_scaffold_17423
Species: Sphingobium lactosutens (100%)
2 2356 bp 63.33 5.09 94.61
SCNpilot_expt_1000_bf_scaffold_16650
Class: Alphaproteobacteria (50%)
8 4221 bp 63.40 5.09 90.41
SCNpilot_expt_1000_bf_scaffold_8965
Species: Sphingomonas sp. WHSC-8 (50%)
4 4008 bp 66.99 5.11 89.45
SCNpilot_expt_1000_bf_scaffold_6650
Order: Sphingomonadales (63.16%)
19 15514 bp 64.86 5.14 75.82
SCNpilot_expt_1000_bf_scaffold_12963
Species: Sphingobium baderi (90%)
10 8759 bp 63.65 5.17 56.48
SCNpilot_expt_1000_bf_scaffold_5653
Species: Erythrobacter sp. NAP1 (57.14%)
7 7483 bp 61.30 5.18 81.38
SCNpilot_expt_1000_bf_scaffold_19702
Species: Sphingomonas sp. WHSC-8 (66.67%)
3 2124 bp 69.16 5.18 89.55
SCNpilot_expt_1000_bf_scaffold_6637
Class: Alphaproteobacteria (57.14%)
7 5591 bp 63.75 5.19 88.96
SCNpilot_expt_1000_bf_scaffold_33935
Species: Sphingomonas sp. MM-1 (50%)
2 1345 bp 66.91 5.20 87.21
SCNpilot_expt_1000_bf_scaffold_6937
Genus: Sphingomonas (57.14%)
7 5949 bp 65.52 5.21 89.36
SCNpilot_expt_1000_bf_scaffold_7481
Species: Sphingomonas sp. WHSC-8 (70%)
10 8732 bp 64.93 5.21 81.53
SCNpilot_expt_1000_bf_scaffold_6306
Class: Alphaproteobacteria (71.43%)
7 8530 bp 67.71 5.25 90.56
SCNpilot_expt_1000_bf_scaffold_22544
Species: Novosphingobium tardaugens (50%)
2 2901 bp 61.74 5.26 82.73
SCNpilot_expt_1000_bf_scaffold_20658
Species: Sphingobium chlorophenolicum (50%)
2 2042 bp 59.16 5.26 88.74
Displaying items 51-100 of 416 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.