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SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

SCNPILOT_EXPT_1000_BF_Sphingomonas_67_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 151-200 of 416 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_18235
Class: Alphaproteobacteria (50%)
8 6820 bp 65.84 5.61 75.44
SCNpilot_expt_1000_bf_scaffold_8726
Class: Alphaproteobacteria (50%)
4 4092 bp 64.15 5.62 70.75
SCNpilot_expt_1000_bf_scaffold_10184
Order: Sphingomonadales (54.55%)
11 10359 bp 66.80 5.62 75.73
SCNpilot_expt_1000_bf_scaffold_11753
Order: Sphingomonadales (100%)
6 4093 bp 64.16 5.62 84.73
SCNpilot_expt_1000_bf_scaffold_23991
Species: Sphingomonas sp. WHSC-8 (75%)
4 3996 bp 69.34 5.63 101.88
SCNpilot_expt_1000_bf_scaffold_16672
Genus: Sphingomonas (66.67%)
3 2442 bp 67.44 5.63 97.30
SCNpilot_expt_1000_bf_scaffold_7656
Species: Sphingomonas sp. WHSC-8 (50%)
6 4526 bp 67.65 5.63 95.98
SCNpilot_expt_1000_bf_scaffold_2344
Species: Sphingomonas sp. WHSC-8 (52.38%)
21 21258 bp 66.74 5.63 87.17
SCNpilot_expt_1000_bf_scaffold_3271
Species: Sphingomonas sp. WHSC-8 (69.23%)
13 14017 bp 66.59 5.64 83.00
SCNpilot_expt_1000_bf_scaffold_13562
Genus: Sphingomonas (70%)
10 8306 bp 62.82 5.66 76.64
SCNpilot_expt_1000_bf_scaffold_6272
Species: Sphingomonas sp. WHSC-8 (50%)
12 9736 bp 67.45 5.67 86.15
SCNpilot_expt_1000_bf_scaffold_20688 2 2595 bp 62.35 5.68 79.31
SCNpilot_expt_1000_bf_scaffold_8124
Species: Sphingomonas taxi (50%)
4 6561 bp 67.63 5.68 90.03
SCNpilot_expt_1000_bf_scaffold_5310
Genus: Sphingobium (60%)
10 9031 bp 66.85 5.70 84.74
SCNpilot_expt_1000_bf_scaffold_28408
Species: R_Brevundimonas_68_13 (50%)
2 2844 bp 66.53 5.71 92.19
SCNpilot_expt_1000_bf_scaffold_6755
Species: Sphingomonas sp. WHSC-8 (73.33%)
15 13347 bp 68.27 5.71 91.89
SCNpilot_expt_1000_bf_scaffold_12244
Species: Sphingomonas sp. WHSC-8 (75%)
4 3146 bp 65.26 5.72 93.17
SCNpilot_expt_1000_bf_scaffold_8998
Species: Sphingomonas sp. WHSC-8 (52.63%)
19 13150 bp 66.10 5.74 78.43
SCNpilot_expt_1000_bf_scaffold_14487
Species: Staphylococcus aureus (50%)
2 2744 bp 68.88 5.74 97.30
SCNpilot_expt_1000_bf_scaffold_3800
Order: Sphingomonadales (92.59%)
27 23421 bp 62.94 5.74 82.02
SCNpilot_expt_1000_bf_scaffold_3039
Genus: Sphingomonas (64.29%)
42 38510 bp 65.25 5.74 82.31
SCNpilot_expt_1000_bf_scaffold_5487
Genus: Sphingomonas (63.64%)
11 10349 bp 66.33 5.77 93.63
SCNpilot_expt_1000_bf_scaffold_12541
Genus: Sphingomonas (63.64%)
11 7310 bp 68.06 5.78 73.21
SCNpilot_expt_1000_bf_scaffold_17413
Species: Sphingomonas sp. WHSC-8 (75%)
4 5868 bp 65.05 5.79 68.87
SCNpilot_expt_1000_bf_scaffold_12662
Genus: Sphingomonas (50%)
4 3067 bp 65.76 5.79 89.01
SCNpilot_expt_1000_bf_scaffold_25127
Species: Sphingomonas sanxanigenens (50%)
2 1728 bp 66.78 5.79 96.70
SCNpilot_expt_1000_bf_scaffold_12685
Species: Sphingomonas sp. WHSC-8 (50%)
2 3061 bp 58.51 5.80 82.23
SCNpilot_expt_1000_bf_scaffold_13845
Order: Sphingomonadales (50%)
4 2843 bp 58.00 5.80 41.58
SCNpilot_expt_1000_bf_scaffold_9563
Genus: Sphingomonas (66.67%)
18 16350 bp 65.39 5.80 77.05
SCNpilot_expt_1000_bf_scaffold_9583
Order: Caulobacterales (53.85%)
13 15814 bp 64.35 5.80 82.98
SCNpilot_expt_1000_bf_scaffold_14420
Species: Caulobacter sp. AP07 (50%)
2 3266 bp 66.81 5.82 88.18
SCNpilot_expt_1000_bf_scaffold_11982
Species: Sphingobium baderi (66.67%)
6 3781 bp 65.49 5.82 101.40
SCNpilot_expt_1000_bf_scaffold_11792
Order: Sphingomonadales (62.5%)
8 8031 bp 68.05 5.82 76.20
SCNpilot_expt_1000_bf_scaffold_4029
Genus: Sphingomonas (74.07%)
27 33061 bp 65.46 5.83 78.82
SCNpilot_expt_1000_bf_scaffold_12234
Order: Sphingomonadales (53.33%)
15 12137 bp 65.58 5.83 86.69
SCNpilot_expt_1000_bf_scaffold_9888
Species: uncultured organism (66.67%)
3 3723 bp 65.40 5.84 96.62
SCNpilot_expt_1000_bf_scaffold_14980
Genus: Sphingomonas (60%)
5 3898 bp 65.91 5.84 84.12
SCNpilot_expt_1000_bf_scaffold_44755
Class: Alphaproteobacteria (100%)
3 1027 bp 66.60 5.84 94.64
SCNpilot_expt_1000_bf_scaffold_6102
Genus: Sphingobium (71.43%)
7 8543 bp 62.80 5.85 85.26
SCNpilot_expt_1000_bf_scaffold_5531
Order: Sphingomonadales (62.5%)
8 6066 bp 69.34 5.85 85.76
SCNpilot_expt_1000_bf_scaffold_6564
Genus: Sphingomonas (57.14%)
7 6616 bp 69.07 5.86 89.15
SCNpilot_expt_1000_bf_scaffold_22734
Species: Novosphingobium tardaugens (60%)
5 6563 bp 64.71 5.87 99.28
SCNpilot_expt_1000_bf_scaffold_2939
Species: Sphingobium baderi (61.54%)
13 13073 bp 63.83 5.87 92.21
SCNpilot_expt_1000_bf_scaffold_20424
Species: Sphingomonas sp. WHSC-8 (75%)
4 2812 bp 67.28 5.87 81.61
SCNpilot_expt_1000_bf_scaffold_5158
Class: Alphaproteobacteria (50%)
6 6039 bp 65.41 5.88 94.29
SCNpilot_expt_1000_bf_scaffold_5686
Class: Alphaproteobacteria (58.33%)
12 8553 bp 66.97 5.88 85.79
SCNpilot_expt_1000_bf_scaffold_18295
Genus: Sphingomonas (80%)
5 2848 bp 69.80 5.88 99.65
SCNpilot_expt_1000_bf_scaffold_4041
Species: Sphingomonas sp. WHSC-8 (57.14%)
14 14185 bp 68.24 5.89 85.08
SCNpilot_expt_1000_bf_scaffold_2317
Species: Sphingomonas sp. WHSC-8 (50%)
24 16030 bp 67.82 5.90 84.07
SCNpilot_expt_1000_bf_scaffold_3872
Order: Sphingomonadales (62.86%)
35 29334 bp 67.80 5.91 88.00
Displaying items 151-200 of 416 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.