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SCNpilot_expt_300_bf_scaffold_1026

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1026_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..313)
DNA (312bp) protein (104aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Sphingomonas elodea RepID=UPI0002630428
DNA-directed RNA polymerase subunit beta'
SCNpilot_expt_300_bf_scaffold_1026_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(391..2577)
DNA (2187bp) protein (729aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4C6E1
DNA-directed RNA polymerase subunit beta
SCNpilot_expt_300_bf_scaffold_1026_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..4489)
DNA (1926bp) protein (642aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AJP72130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4C6E1
DNA-directed RNA polymerase subunit beta
SCNpilot_expt_300_bf_scaffold_1026_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4767..6695
DNA (1929bp) protein (643aa)
glutaryl-7-ACA acylase n=1 Tax=Sphingomonas melonis RepID=UPI00036A7B48 rbh
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:EZP55005.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sph
glutaryl-7-ACA acylase
SCNpilot_expt_300_bf_scaffold_1026_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6738..7946
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD619
Uncharacterized protein {ECO:0000313|EMBL:EZP57295.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1026_6
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8196..8576)
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H191_9SPHN
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphing
50S ribosomal protein L7/L12
SCNpilot_expt_300_bf_scaffold_1026_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8644..9159)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Sphingomonas melonis RepID=UPI00036DD128
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
50S ribosomal protein L10
SCNpilot_expt_300_bf_scaffold_1026_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9454..10623)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000378E16D rbh
Putative lactate 2-monooxygenase {ECO:0000313|EMBL:GAO38892.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
lactate 2-monooxygenase
SCNpilot_expt_300_bf_scaffold_1026_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10687..11385)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B2629
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29331.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_1026_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11382..12629)
DNA (1248bp) protein (416aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYF0_9SPHN
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AIT06707.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
SCNpilot_expt_300_bf_scaffold_1026_11
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12794..13486)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4A755 rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
50S ribosomal protein L1 rbh
SCNpilot_expt_300_bf_scaffold_1026_12
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13489..13920)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5ABD8
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobi
rplK; 50S ribosomal protein L11
SCNpilot_expt_300_bf_scaffold_1026_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14071..15054)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FDEA rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP52986.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein rbh
SCNpilot_expt_300_bf_scaffold_1026_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15201..16367)
DNA (1167bp) protein (389aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364EE81
signal protein
SCNpilot_expt_300_bf_scaffold_1026_15
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16418..17155)
DNA (738bp) protein (246aa)
chemotaxis protein CheY n=2 Tax=Sphingomonas RepID=UPI000287B5AA
Putative two-component response regulator {ECO:0000313|EMBL:GAL99664.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sour
chemotaxis protein CheY
SCNpilot_expt_300_bf_scaffold_1026_16
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17224..17838)
DNA (615bp) protein (205aa)
UPI0003CFB178 related cluster n=1 Tax=unknown RepID=UPI0003CFB178
Uncharacterized protein {ECO:0000313|EMBL:ESZ86076.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1026_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17957..18742)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367DF1E rbh
Uncharacterized protein {ECO:0000313|EMBL:KHA65651.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein rbh
SCNpilot_expt_300_bf_scaffold_1026_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18739..20271)
DNA (1533bp) protein (511aa)
lcfB2; long-chain-fatty-acid--CoA ligase LcfB (EC:6.2.1.3)
4-coumarate--CoA ligase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1CB rbh
4-coumarate--CoA ligase {ECO:0000313|EMBL:KHA65650.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
SCNpilot_expt_300_bf_scaffold_1026_19
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20343..21134
DNA (792bp) protein (264aa)
3-oxoacyl-acyl-carrier protein reductase {ECO:0000313|EMBL:ERJ20081.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ERJ20081.1};; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaera
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003790142 rbh
SDR-family protein
SCNpilot_expt_300_bf_scaffold_1026_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21438..22130)
DNA (693bp) protein (231aa)
LrgB family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III2_9SPHN rbh
LrgB family protein
LrgB family protein {ECO:0000313|EMBL:BAK67105.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-
SCNpilot_expt_300_bf_scaffold_1026_21
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22127..22489)
DNA (363bp) protein (121aa)
LrgA family protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQ14_9SPHN
LrgA family protein {ECO:0000313|EMBL:EZP82183.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
LrgA family protein
SCNpilot_expt_300_bf_scaffold_1026_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22569..23228)
DNA (660bp) protein (220aa)
glutathione S-transferase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002893B6A
Uncharacterized protein {ECO:0000313|EMBL:EKS36852.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
glutathione S-transferase
SCNpilot_expt_300_bf_scaffold_1026_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23277..24512)
DNA (1236bp) protein (412aa)
MFS transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630ACA rbh
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29167.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
major facilitator transporter
SCNpilot_expt_300_bf_scaffold_1026_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24642..25481
DNA (840bp) protein (280aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376FCDB
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29166.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_1026_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25483..25794
DNA (312bp) protein (104aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376FCDB
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29166.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_1026_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25891..26955
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375994D rbh
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29144.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_1026_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27001..28245)
DNA (1245bp) protein (415aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas melonis RepID=UPI00036684C3 rbh
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AIT05906.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
SCNpilot_expt_300_bf_scaffold_1026_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28400..29707
DNA (1308bp) protein (436aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B43C9 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KHA65648.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp.
acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_1026_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29777..30811
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036118E0 rbh
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29142.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
alcohol dehydrogenase
SCNpilot_expt_300_bf_scaffold_1026_30
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30808..31866
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000365B67E rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KHA65653.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
aminoglycoside phosphotransferase
Displaying items 1-30 of 36 in total

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