ggKbase home page

SCNpilot_expt_300_bf_scaffold_1452

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1452_1
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1230
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B35DF3
Uncharacterized protein {ECO:0000313|EMBL:KKC24670.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1452_2
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1308..1478)
DNA (171bp) protein (57aa)
Putative response regulator receiver (CheY-like protein) n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S7Q1_9BRAD
putative response regulator receiver, CheY-like protein
Putative response regulator receiver (CheY-like protein) {ECO:0000313|EMBL:CCD90228.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizob
SCNpilot_expt_300_bf_scaffold_1452_3
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1623..3911)
DNA (2289bp) protein (763aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H2Z4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB06468.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
sensor histidine kinase
SCNpilot_expt_300_bf_scaffold_1452_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4037..4300
DNA (264bp) protein (88aa)
UPI0003D032C2 related cluster n=1 Tax=unknown RepID=UPI0003D032C2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA09659.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis f
SCNpilot_expt_300_bf_scaffold_1452_5
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4338..5144
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037F0ED1 rbh
KR domain protein {ECO:0000313|EMBL:KDD61978.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica O
short-chain dehydrogenase/reductase
SCNpilot_expt_300_bf_scaffold_1452_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5148..5585)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK4_9SPHN
DNA, contig: SP643 {ECO:0000313|EMBL:GAN14573.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1452_7
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5866..6180
DNA (315bp) protein (105aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA07082.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis f
SCNpilot_expt_300_bf_scaffold_1452_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6177..6776
DNA (600bp) protein (200aa)
2OG-Fe(II) oxygenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039A557C
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:KFD30107.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuy
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1452_9
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6787..7245
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037F92B6
Uncharacterized protein {ECO:0000313|EMBL:EQB11358.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
Aha1 domain-containing protein
SCNpilot_expt_300_bf_scaffold_1452_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7269..7847)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036EBC04
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT06002.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
SCNpilot_expt_300_bf_scaffold_1452_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7877..8383)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGH6_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71392.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wi
SCNpilot_expt_300_bf_scaffold_1452_12
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8380..9192)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IPM5_9SPHN rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:EXS70850.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp
exodeoxyribonuclease III Xth
SCNpilot_expt_300_bf_scaffold_1452_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9203..11065)
DNA (1863bp) protein (621aa)
DNA ligase D n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGH4_SPHWW rbh
DNA ligase D
DNA ligase D {ECO:0000313|EMBL:ABQ71390.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (st
SCNpilot_expt_300_bf_scaffold_1452_14
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11450..13042)
DNA (1593bp) protein (531aa)
Beta-lactamase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y279_9PROT rbh
Beta-lactamase {ECO:0000313|EMBL:EGY00373.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazon
Beta-lactamase
SCNpilot_expt_300_bf_scaffold_1452_15
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13049..14479)
DNA (1431bp) protein (477aa)
Putative amidase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2S9I8_9PROT rbh
Putative amidase {ECO:0000313|EMBL:EMD82055.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
6-aminohexanoate-cyclic-dimer hydrolase
SCNpilot_expt_300_bf_scaffold_1452_16
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14722..15936)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003655D78
Beta-lactamase {ECO:0000313|EMBL:EFL10912.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
beta-lactamase
SCNpilot_expt_300_bf_scaffold_1452_17
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16426..17298
DNA (873bp) protein (291aa)
Putative esterase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VNL1_RHOPX
Scaffold8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31800.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
putative esterase
SCNpilot_expt_300_bf_scaffold_1452_18
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17295..18023
DNA (729bp) protein (243aa)
TetR family transcriptional regulator n=1 Tax=Gluconobacter frateurii RepID=UPI00029B23FE
TetR family transcriptional regulator {ECO:0000313|EMBL:KCZ97202.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hypho
TetR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_1452_19
unknown

Not on your lists

comp(18556..18771)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1452_20
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18815..19087
DNA (273bp) protein (91aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Novosphingobium sp. AP12 RepID=J2PNV3_9SPHN
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJL29302.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase
SCNpilot_expt_300_bf_scaffold_1452_21
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19172..20605)
DNA (1434bp) protein (478aa)
Major facilitator superfamily (MFS_1) transporter n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39HW8_BURS3
major facilitator transporter
Major facilitator superfamily (MFS_1) transporter {ECO:0000313|EMBL:ABB07948.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Bu
SCNpilot_expt_300_bf_scaffold_1452_22
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20733..21554)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KY27_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EED34147.1}; TaxID=565045 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Luminiphilus.;" source="Luminiphilus syltensis NOR5-1
hypothetical protein
Displaying 22 items

View Taxonomy