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SCNpilot_expt_500_bf_scaffold_1097

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1097_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1..681
DNA (681bp) protein (227aa)
Uncharacterized protein {ECO:0000313|EMBL:AIF82946.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
SCNpilot_expt_500_bf_scaffold_1097_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1753..2211
DNA (459bp) protein (153aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4R4_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL94455.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
SCNpilot_expt_500_bf_scaffold_1097_3
unknown

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2419..3585
DNA (1167bp) protein (389aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1097_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3691..5277)
DNA (1587bp) protein (529aa)
protease (EC:3.4.21.100 3.4.21.101); K05998 pseudomonalisin [EC:3.4.21.100]; K05999 xanthomonalisin [EC:3.4.21.101] rbh
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D58BE0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGI77788.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_expt_500_bf_scaffold_1097_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5595..5864)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKJ4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87735.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1097_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5919..6782
DNA (864bp) protein (288aa)
Cation diffusion facilitator family transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB6_9GAMM rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EIM02358.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cation diffusion facilitator family transporter rbh
SCNpilot_expt_500_bf_scaffold_1097_7
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6879..7223)
DNA (345bp) protein (115aa)
Uncharacterized protein n=3 Tax=Ralstonia solanacearum RepID=M4UBV2_RALSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH83848.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
SCNpilot_expt_500_bf_scaffold_1097_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7326..7904)
DNA (579bp) protein (193aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Putative glutathione S-transferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2R4_9GAMM
Putative glutathione S-transferase {ECO:0000313|EMBL:EIL93755.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_bf_scaffold_1097_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8002..8388)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR24_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94452.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lactoylglutathione lyase family protein
SCNpilot_expt_500_bf_scaffold_1097_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8691..9620
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTG5_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV27464.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_expt_500_bf_scaffold_1097_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9717..11657)
DNA (1941bp) protein (647aa)
DNA helicase, Rad3 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB5_9GAMM rbh
DNA helicase, Rad3 {ECO:0000313|EMBL:EIM02357.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA helicase, Rad3 rbh
SCNpilot_expt_500_bf_scaffold_1097_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11891..12268
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4Q9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94450.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peroxiredoxin
SCNpilot_expt_500_bf_scaffold_1097_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12337..12726
DNA (390bp) protein (130aa)
Inner membrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1097_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12746..13270)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4Q5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94446.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1097_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13279..13842)
DNA (564bp) protein (188aa)
Penicillin-binding protein 1B n=1 Tax=Rhodanobacter denitrificans RepID=I4WR29_9GAMM
penicillin-binding protein 1B
Penicillin-binding protein 1B {ECO:0000256|PIRNR:PIRNR002799}; Short=PBP-1b {ECO:0000256|PIRNR:PIRNR002799};; Short=PBP1b {ECO:0000256|PIRNR:PIRNR002799};; Murein polymerase {ECO:0000256|PIRNR:PIRNR002799}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15602..16441)
DNA (840bp) protein (280aa)
Nucleoside-diphosphate-sugar epimerase n=2 Tax=Rhodanobacter denitrificans RepID=M4NKM1_9GAMM rbh
nucleoside-diphosphate-sugar epimerase rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGG90238.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16449..16823)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WM19_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90239.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16820..18094)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH60_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90239.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18228..20357)
DNA (2130bp) protein (710aa)
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Rhodanobacter denitrificans RepID=M4NH14_9GAMM rbh
(p)ppGpp synthetase, RelA/SpoT family rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1097_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20457..20927
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WM17_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90241.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20848..23385)
DNA (2538bp) protein (846aa)
ATP-dependent helicase HrpA n=1 Tax=Rhodanobacter denitrificans RepID=M4NJG2_9GAMM
ATP-dependent helicase HrpA
ATP-dependent helicase HrpA {ECO:0000313|EMBL:AGG90242.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23346..24980)
DNA (1635bp) protein (545aa)
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4Q0_9GAMM
ATP-dependent RNA helicase {ECO:0000313|EMBL:EIL94441.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ATP-dependent helicase HrpA
SCNpilot_expt_500_bf_scaffold_1097_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25120..25542
DNA (423bp) protein (141aa)
DpsA protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4P9_9GAMM
DNA-binding ferritin-like protein (oxidative damage protectant)
DpsA protein {ECO:0000313|EMBL:EIL94440.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_1097_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25609..28275)
DNA (2667bp) protein (889aa)
Peptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WM13_9GAMM rbh
Insulinase {ECO:0000313|EMBL:EIL95719.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative Zn-dependent peptidase rbh
SCNpilot_expt_500_bf_scaffold_1097_25
unknown

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comp(28352..28660)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1097_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28669..30180)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8D0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95721.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1097_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30190..31668)
DNA (1479bp) protein (493aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8D1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95722.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1097_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31665..32903)
DNA (1239bp) protein (413aa)
Multidrug ABC transporter ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8D2_9GAMM
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:EIL95723.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type multidrug transport system, ATPase component
SCNpilot_expt_500_bf_scaffold_1097_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33243..33611
DNA (369bp) protein (123aa)
Transposase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND98_9GAMM
transposase
Transposase {ECO:0000313|EMBL:AGG87418.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1097_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33631..35217
DNA (1587bp) protein (529aa)
Transposase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAD9_9GAMM rbh
transposase rbh
Transposase {ECO:0000313|EMBL:AGG87419.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 37 in total

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