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SCNpilot_expt_500_bf_scaffold_1590

Search features with annotation key words

Displaying items 61-88 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1590_61
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53426..54190
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D8914
UPF0271 protein CH75_21295 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
LamB/YcsF family protein; K07160 UPF0271 protein
SCNpilot_expt_500_bf_scaffold_1590_62
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54811..55779
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F86680 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHX15476.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1590_63
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55794..56450
DNA (657bp) protein (219aa)
Pyrrolidone-carboxylate peptidase {ECO:0000256|HAMAP-Rule:MF_00417}; EC=3.4.19.3 {ECO:0000256|HAMAP-Rule:MF_00417};; 5-oxoprolyl-peptidase {ECO:0000256|HAMAP-Rule:MF_00417}; Pyroglutamyl-peptidase I {ECO:0000256|HAMAP-Rule:MF_00417}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345D43D rbh
pyrrolidone-carboxylate peptidase
SCNpilot_expt_500_bf_scaffold_1590_64
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56517..56996)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88478.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_65
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57108..57623)
DNA (516bp) protein (172aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Deoxycytidine triphosphate deaminase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8H4_9GAMM
deoxycytidine triphosphate deaminase
SCNpilot_expt_500_bf_scaffold_1590_66
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57801..58343)
DNA (543bp) protein (181aa)
NADPH-dependent FMN reductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8H5_9GAMM
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EIL95766.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative flavoprotein
SCNpilot_expt_500_bf_scaffold_1590_67
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58340..59464)
DNA (1125bp) protein (375aa)
ATPase involved in chromosome partitioning n=1 Tax=Rhodanobacter denitrificans RepID=I4WLC8_9GAMM rbh
ATPase involved in chromosome partitioning rbh
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:AGG88475.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_68
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59641..60024
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W649_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94940.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1590_69
unknown

Not on your lists

60134..60283
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1590_70
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60475..60675
DNA (201bp) protein (67aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
methionyl-tRNA synthetase n=1 Tax=Dyella japonica RepID=UPI000316C8A9
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_bf_scaffold_1590_71].
SCNpilot_expt_500_bf_scaffold_1590_71
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60833..61201
DNA (369bp) protein (123aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK78_9GAMM
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_bf_scaffold_1590_72].
SCNpilot_expt_500_bf_scaffold_1590_72
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


61265..62470
DNA (1206bp) protein (402aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK78_9GAMM
SCNpilot_expt_500_bf_scaffold_1590_73
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62557..62844)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W647_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_74
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62916..63524
DNA (609bp) protein (203aa)
RnfABCDGE type electron transport complex subunit B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRB2_9GAMM
RnfABCDGE type electron transport complex subunit B {ECO:0000313|EMBL:EIM02004.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
electron transport complex, RnfABCDGE type, B subunit rbh
SCNpilot_expt_500_bf_scaffold_1590_75
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63521..64159
DNA (639bp) protein (213aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18 3.2.2.-) rbh
Endonuclease III n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRB1_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_1590_76
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64206..64952)
DNA (747bp) protein (249aa)
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W477_9GAMM rbh
23S RNA-specific pseudouridylate synthase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_77
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65333..65641
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W478_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94269.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1590_78
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65852..66286
DNA (435bp) protein (145aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR9_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_500_bf_scaffold_1590_79
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66346..67203)
DNA (858bp) protein (286aa)
Serine/threonine protein kinase involved in cell cycle control n=1 Tax=Rhodanobacter denitrificans RepID=I4WWS0_9GAMM
serine/threonine protein kinase involved in cell cycle control
Serine/threonine protein kinase involved in cell cycle control {ECO:0000313|EMBL:AGG89528.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_80
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67277..68026)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD61_9GAMM
luciferase family oxidoreductase, group 1
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_81
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68368..69420
DNA (1053bp) protein (351aa)
Putative signal transduction protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHH6_9GAMM rbh
putative signal transduction protein rbh
Putative signal transduction protein {ECO:0000313|EMBL:AGG89532.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_82
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69504..69605
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWS3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_83
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69615..70016)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A43C4A
lipoprotein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_84
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70053..70823)
DNA (771bp) protein (257aa)
LytTR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WY31_9GAMM
response regulator of the LytR/AlgR family
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_500_bf_scaffold_1590_85
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70816..72012)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034580AA
Histidine kinase {ECO:0000313|EMBL:KGO98947.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
putative regulator of cell autolysis
SCNpilot_expt_500_bf_scaffold_1590_86
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72143..72913)
DNA (771bp) protein (257aa)
dimethylargininase (EC:3.5.3.18); K01482 dimethylargininase [EC:3.5.3.18]
Dimethylargininase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W486_9GAMM rbh
Dimethylargininase {ECO:0000313|EMBL:EIL94277.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_1590_87
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73192..73965)
DNA (774bp) protein (258aa)
Putative methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD67_9GAMM rbh
putative methyltransferase rbh
Putative methyltransferase {ECO:0000313|EMBL:AGG89535.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_88
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74132..74947
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NPG4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89536.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 61-88 of 88 in total

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