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SCNpilot_expt_500_bf_scaffold_1590

Search features with annotation key words

Displaying items 31-60 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1590_31
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24371..25528)
DNA (1158bp) protein (386aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRF0_9GAMM
SCNpilot_expt_500_bf_scaffold_1590_32
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25754..26557
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NLA9_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG88506.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_33
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26579..27013)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W680_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94971.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1590_34
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27355..28224)
DNA (870bp) protein (290aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRE4_9GAMM rbh
acetyl-CoA carboxylase carboxyltransferase subunit alpha rbh
SCNpilot_expt_500_bf_scaffold_1590_35
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28265..29065)
DNA (801bp) protein (267aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRE3_9GAMM
SCNpilot_expt_500_bf_scaffold_1590_36
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29179..30390)
DNA (1212bp) protein (404aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tryptophan synthase, beta chain (EC:4.2.1.20) rbh
Tryptophan synthase beta chain n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W675_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_1590_37
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30449..31453)
DNA (1005bp) protein (335aa)
Pass1-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRE1_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_38
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31623..32033)
DNA (411bp) protein (137aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLF1_9GAMM
SCNpilot_expt_500_bf_scaffold_1590_39
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32030..32812)
DNA (783bp) protein (261aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA pseudouridine synthase A n=1 Tax=Rhodanobacter denitrificans RepID=I4WLF0_9GAMM rbh
pseudouridylate synthase I rbh
SCNpilot_expt_500_bf_scaffold_1590_40
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33229..35190)
DNA (1962bp) protein (654aa)
FimV N-terminal domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE9_9GAMM
FimV N-terminal domain protein
FimV N-terminal domain protein {ECO:0000313|EMBL:AGG88496.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_41
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35361..35657)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=I4WLE8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_42
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35660..36691)
DNA (1032bp) protein (344aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11) rbh
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCW3_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_1590_43
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36726..37715)
DNA (990bp) protein (330aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W667_9GAMM rbh
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EIL94958.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lactate dehydrogenase-like oxidoreductase
SCNpilot_expt_500_bf_scaffold_1590_44
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37746..38834)
DNA (1089bp) protein (363aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
chorismate synthase (EC:4.2.3.5) rbh
Chorismate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W666_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_1590_45
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38976..39542)
DNA (567bp) protein (189aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE4_9GAMM
acetyltransferase, ribosomal protein N-acetylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_46
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39544..40470)
DNA (927bp) protein (309aa)
(LSU ribosomal protein L3P)-glutamine N5-methyltransferase (EC:2.1.1.-) rbh
50S ribosomal protein L3 glutamine methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE3_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_47
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40633..41502
DNA (870bp) protein (290aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE2_9GAMM rbh
phosphatidylserine decarboxylase precursor rbh
SCNpilot_expt_500_bf_scaffold_1590_48
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41613..42059
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFV0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88488.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_49
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42087..43640)
DNA (1554bp) protein (518aa)
Soluble lytic murein transglycosylase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEV6_9GAMM rbh
soluble lytic murein transglycosylase-like protein rbh
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:AGG88487.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_50
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43756..43998)
DNA (243bp) protein (81aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_51
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44176..44892)
DNA (717bp) protein (239aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD95493.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_500_bf_scaffold_1590_52
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45417..46667
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC6_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_53
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46664..47173
DNA (510bp) protein (170aa)
Transcription elongation factor GreB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC5_9GAMM rbh
transcription elongation factor GreB rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_54
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47192..48187)
DNA (996bp) protein (332aa)
Phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFU6_9GAMM rbh
phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_1590_55
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48383..49192)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD5_9GAMM
Protein of unknown function (DUF3025)
Uncharacterized protein {ECO:0000313|EMBL:AGG88482.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_1590_56
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49199..50536)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=666685 species="Bacteria; Pro
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD4_9GAMM rbh
ribosomal protein S12 methylthiotransferase RimO rbh
SCNpilot_expt_500_bf_scaffold_1590_57
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50645..51313
DNA (669bp) protein (223aa)
Carboxymethylenebutenolidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC2_9GAMM rbh
Carboxymethylenebutenolidase {ECO:0000313|EMBL:EIM02014.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dienelactone hydrolase-like enzyme rbh
SCNpilot_expt_500_bf_scaffold_1590_58
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51310..51729
DNA (420bp) protein (140aa)
Histidine triad (HIT) protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC1_9GAMM
Histidine triad (HIT) protein {ECO:0000313|EMBL:EIM02013.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
HIT family hydrolase, diadenosine tetraphosphate hydrolase
SCNpilot_expt_500_bf_scaffold_1590_59
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51731..52438
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036BC5FC
Allophanate hydrolase {ECO:0000313|EMBL:AHX15480.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
allophanate hydrolase subunit 1
SCNpilot_expt_500_bf_scaffold_1590_60
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52435..53415
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034705D0
Uncharacterized protein {ECO:0000313|EMBL:AHX15479.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
atzFB; allophanate hydrolase subunit 2; K06350 antagonist of KipI
Displaying items 31-60 of 88 in total

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