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SCNpilot_expt_500_bf_scaffold_4947

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4947_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..305
DNA (303bp) protein (101aa)
TolC family type I secretion outer membrane protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3A8_9GAMM
TolC family type I secretion outer membrane protein {ECO:0000313|EMBL:EIL93949.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type I secretion outer membrane protein, TolC family
SCNpilot_expt_500_bf_scaffold_4947_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(286..1467)
DNA (1182bp) protein (394aa)
3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV2_9GAMM
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EIL97643.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-deoxy-D-manno-octulosonic-acid transferase
SCNpilot_expt_500_bf_scaffold_4947_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1786..2445
DNA (660bp) protein (220aa)
Lipid A biosynthesis lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; EC=2.3.1.241 {ECO:0000256|HAMAP-Rule:MF_01942};; Kdo(2)-lipid IV(A) lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Lipid A biosynthesis lauroyl acyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV3_9GAMM
lipid A biosynthesis lauroyl/palmitoleoyl acyltransferase
SCNpilot_expt_500_bf_scaffold_4947_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2530..3282)
DNA (753bp) protein (251aa)
Glycosyl transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHN2_9GAMM rbh
glycosyl transferase rbh
Glycosyl transferase {ECO:0000313|EMBL:AGG87534.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4947_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3272..4603)
DNA (1332bp) protein (444aa)
Lipid A core--O-antigen ligase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHN1_9GAMM rbh
lipid A core-O-antigen ligase-like enyme rbh
Lipid A core-O-antigen ligase-like enyme {ECO:0000313|EMBL:AGG87533.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4947_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4660..5817)
DNA (1158bp) protein (386aa)
Glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCN1_9GAMM rbh
glycosyltransferase rbh
Glycosyltransferase {ECO:0000313|EMBL:AGG87532.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4947_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5872..6081)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97650.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4947_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6241..7344
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3B5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93956.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Na+/proline symporter rbh
SCNpilot_expt_500_bf_scaffold_4947_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7341..7475
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHM8_9GAMM
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AGG87530.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4947_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7555..8148)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3B6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93957.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_4947_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8330..9346
DNA (1017bp) protein (339aa)
Putative nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHM5_9GAMM rbh
putative nucleoside-diphosphate-sugar epimerase rbh
Putative nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGG87527.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4947_12

Not on your lists

comp(9419..12436)
DNA (3018bp) protein (1006aa)
Thiazole biosynthesis (Fragment) n=2 Tax=mine drainage metagenome RepID=T0ZA60_9ZZZZ rbh
Thiazole biosynthesis {ECO:0000313|EMBL:EQD41938.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
two-component system sensor-response regulator hybrid protein
SCNpilot_expt_500_bf_scaffold_4947_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12596..13567)
DNA (972bp) protein (324aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAV5_9GAMM
glutamine synthetase adenylyltransferase
Displaying 13 items

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