ggKbase home page

SCNpilot_expt_500_bf_scaffold_2620

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2620_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..743
DNA (741bp) protein (247aa)
LPS-assembly protein LptD n=1 Tax=Rhodanobacter denitrificans RepID=I4WVM8_9GAMM
organic solvent tolerance protein OstA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_2620_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

976..2064
DNA (1089bp) protein (363aa)
Chaperone SurA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSK9_9GAMM
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
parvulin-like peptidyl-prolyl isomerase
SCNpilot_expt_500_bf_scaffold_2620_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2164..3012
DNA (849bp) protein (283aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSK8_9GAMM
SCNpilot_expt_500_bf_scaffold_2620_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3496..3861
DNA (366bp) protein (122aa)
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein {ECO:0000313|EMBL:EIL99823.1}; EC=2.1.1.- {ECO:0000313|EMBL:EIL99823.1};; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dimethyladenosine transferase (EC:2.1.1.-)
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGV4_9GAMM
SCNpilot_expt_500_bf_scaffold_2620_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4036..4230
DNA (195bp) protein (65aa)
Protein ApaG n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVH0_9GAMM
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uncharacterized protein affecting Mg2+/Co2+ transport
SCNpilot_expt_500_bf_scaffold_2620_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4246..4515
DNA (270bp) protein (90aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|SAAS:SAAS00088330};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Diadenosine tetraphosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG9_9GAMM
symmetrical bis(5'-nucleosyl)-tetraphosphatase
SCNpilot_expt_500_bf_scaffold_2620_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4538..5062
DNA (525bp) protein (175aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|SAAS:SAAS00088330};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Diadenosine tetraphosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVN3_9GAMM
symmetrical bis(5'-nucleosyl)-tetraphosphatase
SCNpilot_expt_500_bf_scaffold_2620_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5158..6675)
DNA (1518bp) protein (506aa)
Protein translocase subunit SecA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG8_9GAMM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
preprotein translocase, SecA subunit
SCNpilot_expt_500_bf_scaffold_2620_9
Streptomyces ghanaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6672..7874)
DNA (1203bp) protein (401aa)
SecA n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=D5ZZ67_9ACTO
SecA {ECO:0000313|EMBL:EFE69135.2}; TaxID=566461 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ghanaensis ATCC 14672.;"
SCNpilot_expt_500_bf_scaffold_2620_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7986..8588)
DNA (603bp) protein (201aa)
Exported peptidase-like enzyme n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG7_9GAMM rbh
Exported peptidase-like enzyme {ECO:0000313|EMBL:EIL91208.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
metalloendopeptidase-like membrane protein
SCNpilot_expt_500_bf_scaffold_2620_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9619..10491)
DNA (873bp) protein (291aa)
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG5_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_2620_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10921..12063)
DNA (1143bp) protein (381aa)
Cell division protein FtsZ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG4_9GAMM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cell division protein FtsZ
SCNpilot_expt_500_bf_scaffold_2620_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12187..13419)
DNA (1233bp) protein (411aa)
Cell division protein ftsA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG3_9GAMM rbh
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cell division protein FtsA rbh
SCNpilot_expt_500_bf_scaffold_2620_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13430..14164)
DNA (735bp) protein (245aa)
Cell division protein FtsQ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG2_9GAMM rbh
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cell division septal protein rbh
SCNpilot_expt_500_bf_scaffold_2620_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14161..15228)
DNA (1068bp) protein (356aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF7BA rbh
SCNpilot_expt_500_bf_scaffold_2620_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15225..16664)
DNA (1440bp) protein (480aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVG0_9GAMM
SCNpilot_expt_500_bf_scaffold_2620_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16661..17794)
DNA (1134bp) protein (378aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thioox
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227) rbh
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT16_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_2620_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17791..19026)
DNA (1236bp) protein (412aa)
Lipid II flippase FtsW n=1 Tax=Rhodanobacter denitrificans RepID=M4NKY6_9GAMM rbh
cell division-specific peptidoglycan biosynthesis regulator FtsW rbh
Putative lipid II flippase FtsW {ECO:0000256|HAMAP-Rule:MF_00913}; Cell division protein FtsW {ECO:0000256|HAMAP-Rule:MF_00913}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_2620_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19156..19755)
DNA (600bp) protein (200aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVP6_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_2620_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19704..20216)
DNA (513bp) protein (171aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT14_9GAMM
SCNpilot_expt_500_bf_scaffold_2620_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20206..21588)
DNA (1383bp) protein (461aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10) rbh
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT13_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_2620_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21585..23090)
DNA (1506bp) protein (502aa)
UDP-N-acetylmuramyl-tripeptide synthetase (EC:6.3.2.13) rbh
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVF5_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_2620_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23087..23272)
DNA (186bp) protein (62aa)
cell division protein FtsI/penicillin-binding protein 2 (EC:2.4.1.129)
Cell division protein FtsI/penicillin-binding protein 2 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXK9_9GAMM
Cell division protein FtsI/penicillin-binding protein 2 {ECO:0000313|EMBL:EIL91950.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_bf_scaffold_2620_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23242..24813)
DNA (1572bp) protein (524aa)
cell division protein FtsI/penicillin-binding protein 2 (EC:2.4.1.129)
Cell division protein FtsI/penicillin-binding protein 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVF4_9GAMM
Cell division protein FtsI/penicillin-binding protein 2 {ECO:0000313|EMBL:EIL91195.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_2620_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24813..25082)
DNA (270bp) protein (90aa)
Cell division protein FtsL n=1 Tax=Rhodanobacter denitrificans RepID=I4WVQ0_9GAMM
cell division protein FtsL
Cell division protein FtsL {ECO:0000256|HAMAP-Rule:MF_00910}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_2620_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25079..26038)
DNA (960bp) protein (320aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVF2_9GAMM rbh
S-adenosyl-methyltransferase MraW rbh
SCNpilot_expt_500_bf_scaffold_2620_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26065..26511)
DNA (447bp) protein (149aa)
Protein MraZ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVF1_9GAMM
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
mraZ protein
Displaying 27 items

View Taxonomy