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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 401-450 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_2741 28 21470 bp 32.76 6.05 72.04
SCNpilot_expt_500_bf_scaffold_3145 28 16035 bp 34.57 5.64 60.56
SCNpilot_expt_500_bf_scaffold_1298 27 26840 bp 31.33 5.53 43.87
SCNpilot_expt_500_bf_scaffold_791 27 17369 bp 33.82 6.20 62.08
SCNpilot_expt_500_bf_scaffold_1827 27 27116 bp 33.85 5.64 47.99
SCNpilot_expt_500_bf_scaffold_2041
Domain: Metazoa (51.85%)
27 21024 bp 33.42 6.14 50.56
SCNpilot_expt_500_bf_scaffold_1331
Domain: Metazoa (51.85%)
27 18977 bp 32.54 6.46 45.99
SCNpilot_expt_500_bf_scaffold_3998 27 22061 bp 32.25 6.21 48.52
SCNpilot_expt_500_bf_scaffold_1599 27 23413 bp 34.09 5.98 47.01
SCNpilot_expt_500_bf_scaffold_1088 27 26394 bp 34.23 5.45 63.25
SCNpilot_expt_500_bf_scaffold_1608 27 35716 bp 31.06 5.54 36.94
SCNpilot_expt_500_bf_scaffold_591 27 22381 bp 33.71 5.55 60.24
SCNpilot_expt_500_bf_scaffold_847 27 25196 bp 33.69 6.42 43.30
SCNpilot_expt_500_bf_scaffold_3001 27 21398 bp 32.36 5.46 35.15
SCNpilot_expt_500_bf_scaffold_1632 27 22939 bp 35.26 6.28 46.23
SCNpilot_expt_500_bf_scaffold_611
Domain: Metazoa (55.56%)
27 24964 bp 33.95 5.90 51.93
SCNpilot_expt_500_bf_scaffold_3271 27 29180 bp 32.72 5.39 73.56
SCNpilot_expt_500_bf_scaffold_2624 27 26818 bp 31.10 6.04 49.18
SCNpilot_expt_500_bf_scaffold_1655 27 19881 bp 34.74 5.94 51.65
SCNpilot_expt_500_bf_scaffold_896 27 16024 bp 33.84 5.38 57.68
SCNpilot_expt_500_bf_scaffold_2129 27 24556 bp 35.74 6.22 39.88
SCNpilot_expt_500_bf_scaffold_2407 27 19657 bp 33.07 5.55 63.69
SCNpilot_expt_500_bf_scaffold_2935 27 14393 bp 34.71 5.38 62.91
SCNpilot_expt_500_bf_scaffold_1193 27 19919 bp 32.30 6.01 55.48
SCNpilot_expt_500_bf_scaffold_1194 27 23210 bp 32.27 5.99 39.16
SCNpilot_expt_500_bf_scaffold_3340 27 23709 bp 32.24 5.73 49.07
SCNpilot_expt_500_bf_scaffold_1713
Species: Adineta vaga (62.96%)
27 23696 bp 32.45 5.73 51.07
SCNpilot_expt_500_bf_scaffold_3859 27 15535 bp 34.05 5.50 62.80
SCNpilot_expt_500_bf_scaffold_2951 27 35260 bp 30.01 5.59 49.82
SCNpilot_expt_500_bf_scaffold_2952 27 19198 bp 30.88 5.76 42.13
SCNpilot_expt_500_bf_scaffold_1208 27 23481 bp 32.90 6.36 50.66
SCNpilot_expt_500_bf_scaffold_5073 27 19634 bp 31.74 5.50 42.83
SCNpilot_expt_500_bf_scaffold_3101 27 18376 bp 33.88 5.82 57.03
SCNpilot_expt_500_bf_scaffold_1474 27 24978 bp 32.30 5.67 48.16
SCNpilot_expt_500_bf_scaffold_3123 27 23822 bp 30.34 6.28 40.93
SCNpilot_expt_500_bf_scaffold_980 27 20908 bp 34.57 6.39 76.19
SCNpilot_expt_500_bf_scaffold_725 27 28032 bp 32.60 5.90 45.42
SCNpilot_expt_500_bf_scaffold_1237 27 24953 bp 31.57 6.11 38.98
SCNpilot_expt_500_bf_scaffold_1496 27 21254 bp 32.91 5.98 57.07
SCNpilot_expt_500_bf_scaffold_2485
Domain: Metazoa (51.85%)
27 18274 bp 33.49 5.01 60.32
SCNpilot_expt_500_bf_scaffold_5631 27 15313 bp 33.36 5.96 47.06
SCNpilot_expt_500_bf_scaffold_2751 27 21586 bp 34.18 5.88 49.88
SCNpilot_expt_500_bf_scaffold_1775 27 22893 bp 33.89 5.57 45.84
SCNpilot_expt_500_bf_scaffold_2248 26 26638 bp 32.89 6.01 47.57
SCNpilot_expt_500_bf_scaffold_1787
Domain: Metazoa (50%)
26 29936 bp 35.05 6.10 38.15
SCNpilot_expt_500_bf_scaffold_1022 26 23552 bp 34.16 5.73 41.08
SCNpilot_expt_500_bf_scaffold_779 26 27022 bp 32.05 6.59 33.73
SCNpilot_expt_500_bf_scaffold_3180 26 17106 bp 33.25 6.15 42.42
SCNpilot_expt_500_bf_scaffold_782
Domain: Metazoa (57.69%)
26 17585 bp 33.03 6.74 50.62
SCNpilot_expt_500_bf_scaffold_3441
Domain: Metazoa (53.85%)
26 17085 bp 33.01 6.35 62.72
Displaying items 401-450 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.