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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 651-700 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_1825 22 19299 bp 32.43 5.47 47.92
SCNpilot_expt_500_bf_scaffold_8160
Domain: Metazoa (59.09%)
22 15582 bp 34.70 5.17 42.76
SCNpilot_expt_500_bf_scaffold_1321 22 12629 bp 31.93 6.00 52.33
SCNpilot_expt_500_bf_scaffold_4151 22 18114 bp 33.01 6.03 49.02
SCNpilot_expt_500_bf_scaffold_1585 22 19700 bp 32.92 6.13 46.11
SCNpilot_expt_500_bf_scaffold_2566 22 19406 bp 31.83 5.33 71.22
SCNpilot_expt_500_bf_scaffold_3225 22 17052 bp 33.05 5.88 47.59
SCNpilot_expt_500_bf_scaffold_3999 22 12678 bp 33.64 5.62 75.06
SCNpilot_expt_500_bf_scaffold_7369 22 17776 bp 31.34 5.53 51.41
SCNpilot_expt_500_bf_scaffold_6378 22 16287 bp 34.14 5.14 57.95
SCNpilot_expt_500_bf_scaffold_4183 22 20485 bp 33.85 6.22 41.87
SCNpilot_expt_500_bf_scaffold_2850 22 17522 bp 32.72 5.64 56.23
SCNpilot_expt_500_bf_scaffold_4963
Domain: Metazoa (50%)
22 11577 bp 34.06 6.28 56.93
SCNpilot_expt_500_bf_scaffold_2097
Domain: Metazoa (50%)
22 16306 bp 33.81 6.15 52.77
SCNpilot_expt_500_bf_scaffold_1637 22 11277 bp 32.61 5.25 48.44
SCNpilot_expt_500_bf_scaffold_3270 22 19588 bp 32.91 5.69 47.16
SCNpilot_expt_500_bf_scaffold_1131 22 13839 bp 32.17 6.12 63.43
SCNpilot_expt_500_bf_scaffold_2621 22 16898 bp 34.27 6.33 58.84
SCNpilot_expt_500_bf_scaffold_2113 22 18230 bp 32.14 6.20 43.87
SCNpilot_expt_500_bf_scaffold_1140 22 20550 bp 32.54 5.86 41.59
SCNpilot_expt_500_bf_scaffold_3797 22 16060 bp 32.08 6.06 51.41
SCNpilot_expt_500_bf_scaffold_3802
Domain: Metazoa (50%)
22 21587 bp 33.21 5.86 63.39
SCNpilot_expt_500_bf_scaffold_3549 22 15980 bp 33.77 6.13 47.52
SCNpilot_expt_500_bf_scaffold_1663 22 23222 bp 34.17 6.02 45.54
SCNpilot_expt_500_bf_scaffold_1152
Domain: Metazoa (54.55%)
22 15898 bp 35.17 5.98 47.18
SCNpilot_expt_500_bf_scaffold_1409 22 15824 bp 33.28 5.96 56.71
SCNpilot_expt_500_bf_scaffold_2394 22 15288 bp 32.40 5.31 52.59
SCNpilot_expt_500_bf_scaffold_2414
Domain: Metazoa (54.55%)
22 14747 bp 32.56 5.95 65.10
SCNpilot_expt_500_bf_scaffold_5060 22 21706 bp 32.58 6.07 57.36
SCNpilot_expt_500_bf_scaffold_690 22 19158 bp 31.79 6.68 40.40
SCNpilot_expt_500_bf_scaffold_1970 22 22850 bp 35.86 6.04 63.18
SCNpilot_expt_500_bf_scaffold_2180 22 10906 bp 33.99 6.28 53.61
SCNpilot_expt_500_bf_scaffold_1972 22 19644 bp 33.13 6.11 59.96
SCNpilot_expt_500_bf_scaffold_5075 22 20508 bp 35.59 5.35 53.70
SCNpilot_expt_500_bf_scaffold_3867 22 13602 bp 33.22 6.65 52.76
SCNpilot_expt_500_bf_scaffold_700 22 19048 bp 33.86 6.31 48.08
SCNpilot_expt_500_bf_scaffold_1478 22 18827 bp 33.46 5.63 55.75
SCNpilot_expt_500_bf_scaffold_2200 22 22415 bp 30.89 6.05 38.06
SCNpilot_expt_500_bf_scaffold_1738 22 18440 bp 33.20 5.69 42.25
SCNpilot_expt_500_bf_scaffold_1994
Domain: Metazoa (50%)
22 14658 bp 33.26 6.98 48.10
SCNpilot_expt_500_bf_scaffold_3370
Domain: Metazoa (50%)
22 14745 bp 32.81 5.82 48.48
SCNpilot_expt_500_bf_scaffold_3628 22 19195 bp 31.79 6.39 43.40
SCNpilot_expt_500_bf_scaffold_5607 22 14549 bp 32.15 5.89 33.71
SCNpilot_expt_500_bf_scaffold_2465 22 18261 bp 34.43 5.59 62.89
SCNpilot_expt_500_bf_scaffold_2467 22 16258 bp 33.05 6.43 67.98
SCNpilot_expt_500_bf_scaffold_724
Domain: Metazoa (50%)
22 18518 bp 34.62 6.45 55.55
SCNpilot_expt_500_bf_scaffold_983 22 15164 bp 34.21 5.69 50.88
SCNpilot_expt_500_bf_scaffold_2473 22 17612 bp 33.99 5.86 51.58
SCNpilot_expt_500_bf_scaffold_1500 22 14613 bp 32.58 5.99 62.25
SCNpilot_expt_500_bf_scaffold_4077 22 18381 bp 32.05 5.05 60.86
Displaying items 651-700 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.