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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 51-100 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_403 50 42645 bp 32.54 6.32 56.67
SCNpilot_expt_500_bf_scaffold_1451
Domain: Metazoa (60%)
50 34582 bp 33.48 6.07 45.34
SCNpilot_expt_500_bf_scaffold_445 50 40871 bp 33.83 5.97 54.23
SCNpilot_expt_500_bf_scaffold_1044 49 47989 bp 34.01 6.01 42.04
SCNpilot_expt_500_bf_scaffold_1096
Domain: Metazoa (53.06%)
49 35005 bp 36.87 5.95 63.58
SCNpilot_expt_500_bf_scaffold_1976 49 44259 bp 32.98 6.11 44.10
SCNpilot_expt_500_bf_scaffold_531 48 39393 bp 33.73 5.53 48.32
SCNpilot_expt_500_bf_scaffold_540 48 35660 bp 36.26 5.92 61.03
SCNpilot_expt_500_bf_scaffold_571 48 34963 bp 32.96 6.12 47.02
SCNpilot_expt_500_bf_scaffold_850 48 34708 bp 33.23 6.02 48.46
SCNpilot_expt_500_bf_scaffold_2214 48 33718 bp 33.64 6.13 53.22
SCNpilot_expt_500_bf_scaffold_1502 48 43967 bp 31.00 5.60 42.13
SCNpilot_expt_500_bf_scaffold_747 48 41818 bp 32.81 6.01 64.33
SCNpilot_expt_500_bf_scaffold_2503 47 44096 bp 32.89 6.16 45.18
SCNpilot_expt_500_bf_scaffold_567 47 41589 bp 33.13 5.93 56.40
SCNpilot_expt_500_bf_scaffold_1412
Domain: Metazoa (57.45%)
47 28770 bp 32.08 6.26 53.57
SCNpilot_expt_500_bf_scaffold_1680 47 31465 bp 33.62 6.05 51.18
SCNpilot_expt_500_bf_scaffold_2693 47 40848 bp 32.71 5.83 49.07
SCNpilot_expt_500_bf_scaffold_962 47 35919 bp 31.47 6.77 37.67
SCNpilot_expt_500_bf_scaffold_1820 46 33721 bp 33.77 6.17 49.06
SCNpilot_expt_500_bf_scaffold_4937 46 36623 bp 32.39 6.00 49.16
SCNpilot_expt_500_bf_scaffold_1350 46 31464 bp 35.33 5.63 62.28
SCNpilot_expt_500_bf_scaffold_903
Domain: Metazoa (52.17%)
46 47520 bp 33.39 5.71 56.91
SCNpilot_expt_500_bf_scaffold_921 46 38497 bp 32.20 5.83 46.09
SCNpilot_expt_500_bf_scaffold_1182
Domain: Metazoa (56.52%)
46 28706 bp 34.17 6.08 54.26
SCNpilot_expt_500_bf_scaffold_4046 46 37066 bp 34.56 5.76 66.32
SCNpilot_expt_500_bf_scaffold_1758 46 28839 bp 34.21 6.37 61.79
SCNpilot_expt_500_bf_scaffold_1248 46 47929 bp 35.23 6.24 71.26
SCNpilot_expt_500_bf_scaffold_483 46 40529 bp 32.74 6.42 43.90
SCNpilot_expt_500_bf_scaffold_1074 45 32174 bp 32.64 5.64 65.49
SCNpilot_expt_500_bf_scaffold_1087 45 39055 bp 32.80 6.42 52.56
SCNpilot_expt_500_bf_scaffold_2076 45 23132 bp 33.49 5.89 57.75
SCNpilot_expt_500_bf_scaffold_877
Domain: Metazoa (51.11%)
45 31006 bp 33.06 5.67 51.85
SCNpilot_expt_500_bf_scaffold_650 45 37383 bp 32.86 5.68 42.79
SCNpilot_expt_500_bf_scaffold_1180 45 30527 bp 33.24 5.89 56.19
SCNpilot_expt_500_bf_scaffold_976 45 35917 bp 35.02 5.82 50.49
SCNpilot_expt_500_bf_scaffold_1270 44 35167 bp 35.74 6.38 50.95
SCNpilot_expt_500_bf_scaffold_566
Domain: Metazoa (63.64%)
44 26869 bp 33.10 6.42 55.58
SCNpilot_expt_500_bf_scaffold_865 44 42273 bp 34.16 6.38 51.88
SCNpilot_expt_500_bf_scaffold_2655 44 28689 bp 34.29 5.70 55.69
SCNpilot_expt_500_bf_scaffold_993 44 34807 bp 32.96 5.72 58.13
SCNpilot_expt_500_bf_scaffold_1575 43 23830 bp 32.87 5.70 58.70
SCNpilot_expt_500_bf_scaffold_1081 43 30768 bp 32.64 5.70 58.44
SCNpilot_expt_500_bf_scaffold_1083 43 37149 bp 35.04 5.94 52.61
SCNpilot_expt_500_bf_scaffold_2849 43 27182 bp 31.63 5.47 49.85
SCNpilot_expt_500_bf_scaffold_854 43 33099 bp 32.85 5.57 39.74
SCNpilot_expt_500_bf_scaffold_627 43 33664 bp 33.31 6.08 53.89
SCNpilot_expt_500_bf_scaffold_1249 43 30307 bp 31.73 5.99 46.55
SCNpilot_expt_500_bf_scaffold_1507 43 36111 bp 35.16 6.36 52.15
SCNpilot_expt_500_bf_scaffold_3402 43 29951 bp 33.69 5.60 45.51
Displaying items 51-100 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.