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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 101-150 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_520 42 37919 bp 32.70 5.64 41.16
SCNpilot_expt_500_bf_scaffold_623
Domain: Metazoa (54.76%)
42 27123 bp 33.33 5.93 65.62
SCNpilot_expt_500_bf_scaffold_1136
Domain: Metazoa (54.76%)
42 26423 bp 33.60 6.52 51.73
SCNpilot_expt_500_bf_scaffold_3301 42 37644 bp 34.49 6.02 46.88
SCNpilot_expt_500_bf_scaffold_3830 42 34775 bp 33.59 5.61 41.88
SCNpilot_expt_500_bf_scaffold_989 42 39053 bp 35.02 5.48 57.11
SCNpilot_expt_500_bf_scaffold_2495 42 30860 bp 32.07 6.01 49.18
SCNpilot_expt_500_bf_scaffold_1809
Domain: Metazoa (58.54%)
41 30182 bp 33.35 6.30 53.02
SCNpilot_expt_500_bf_scaffold_1070 41 32503 bp 34.86 5.95 51.19
SCNpilot_expt_500_bf_scaffold_2048 41 30263 bp 32.71 5.80 53.72
SCNpilot_expt_500_bf_scaffold_3004 41 34552 bp 33.70 5.88 53.94
SCNpilot_expt_500_bf_scaffold_632 41 34969 bp 33.27 5.80 35.58
SCNpilot_expt_500_bf_scaffold_2128 41 30758 bp 33.44 5.97 52.43
SCNpilot_expt_500_bf_scaffold_1192 41 32659 bp 33.38 5.66 54.14
SCNpilot_expt_500_bf_scaffold_722 41 32054 bp 34.33 5.90 50.03
SCNpilot_expt_500_bf_scaffold_1000 41 27451 bp 33.47 5.51 59.81
SCNpilot_expt_500_bf_scaffold_810 40 32655 bp 35.71 6.46 51.78
SCNpilot_expt_500_bf_scaffold_2317 40 24068 bp 33.01 5.59 61.40
SCNpilot_expt_500_bf_scaffold_2876 40 26887 bp 32.86 6.08 49.11
SCNpilot_expt_500_bf_scaffold_4216 40 28449 bp 33.20 6.19 40.60
SCNpilot_expt_500_bf_scaffold_628 40 45165 bp 32.18 5.94 48.29
SCNpilot_expt_500_bf_scaffold_641 40 37114 bp 30.65 6.29 67.55
SCNpilot_expt_500_bf_scaffold_1167 40 29064 bp 32.82 6.05 46.54
SCNpilot_expt_500_bf_scaffold_923 40 40179 bp 32.88 5.57 45.24
SCNpilot_expt_500_bf_scaffold_1456 40 25016 bp 31.87 5.91 61.99
SCNpilot_expt_500_bf_scaffold_524 39 28685 bp 33.03 6.10 65.54
SCNpilot_expt_500_bf_scaffold_807 39 27199 bp 34.85 5.94 59.95
SCNpilot_expt_500_bf_scaffold_1319 39 25822 bp 33.30 5.64 47.17
SCNpilot_expt_500_bf_scaffold_836 39 25772 bp 33.72 6.72 52.11
SCNpilot_expt_500_bf_scaffold_2078 39 22828 bp 30.68 4.72 67.81
SCNpilot_expt_500_bf_scaffold_3258 39 25195 bp 33.64 5.81 44.06
SCNpilot_expt_500_bf_scaffold_3024 39 30428 bp 33.42 5.54 63.79
SCNpilot_expt_500_bf_scaffold_640 39 32471 bp 34.42 6.61 55.96
SCNpilot_expt_500_bf_scaffold_2151 39 27045 bp 31.49 6.39 54.89
SCNpilot_expt_500_bf_scaffold_935 39 29179 bp 33.53 5.81 46.01
SCNpilot_expt_500_bf_scaffold_1759 39 37701 bp 32.05 6.31 40.81
SCNpilot_expt_500_bf_scaffold_831 38 34933 bp 31.71 5.68 44.89
SCNpilot_expt_500_bf_scaffold_1607
Domain: Metazoa (52.63%)
38 31880 bp 34.70 5.89 45.84
SCNpilot_expt_500_bf_scaffold_2083 38 23516 bp 33.37 5.93 56.64
SCNpilot_expt_500_bf_scaffold_600 38 34366 bp 33.78 5.94 48.00
SCNpilot_expt_500_bf_scaffold_608 38 27847 bp 35.69 5.85 53.41
SCNpilot_expt_500_bf_scaffold_3023 38 32184 bp 34.68 6.30 67.21
SCNpilot_expt_500_bf_scaffold_1394 38 28645 bp 33.82 6.30 53.98
SCNpilot_expt_500_bf_scaffold_2150 38 30753 bp 35.54 5.84 45.45
SCNpilot_expt_500_bf_scaffold_1443 38 32909 bp 34.24 6.10 56.89
SCNpilot_expt_500_bf_scaffold_1199 38 28153 bp 33.77 5.93 69.77
SCNpilot_expt_500_bf_scaffold_442 38 31689 bp 32.38 5.40 47.49
SCNpilot_expt_500_bf_scaffold_715
Domain: Metazoa (57.89%)
38 29967 bp 32.69 5.95 56.35
SCNpilot_expt_500_bf_scaffold_473 38 34807 bp 34.66 6.14 49.74
SCNpilot_expt_500_bf_scaffold_2232 38 28024 bp 34.62 6.00 63.56
Displaying items 101-150 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.