name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_605_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..1006
|
Monoamine oxidase (EC:1.4.3.4)
amine oxidase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCAD9
rbh
Amine oxidase {ECO:0000313|EMBL:AJP73539.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1039..2175
|
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
rbh
homoserine O-acetyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630B32
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2172..2609
|
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003623FF9
GNAT family acetyltransferase {ECO:0000313|EMBL:AJP73541.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N-acetyltransferase GCN5
|
|
SCNpilot_expt_500_bf_scaffold_605_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2606..3193
|
methionine biosynthesis protein MetW n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FACBA4
rbh
SAM-dependent methyltransferase {ECO:0000313|EMBL:AJP73542.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
metW; SAM-dependent methyltransferase
|
|
SCNpilot_expt_500_bf_scaffold_605_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3198..4052
|
nuclease PIN n=1 Tax=Sphingomonas elodea RepID=UPI0002630B34
rbh
Nuclease PIN {ECO:0000313|EMBL:AJP73543.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pirin; K06911
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4063..4497)
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EA124B
Uncharacterized protein {ECO:0000313|EMBL:AJP73544.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4516..5088)
|
single-stranded DNA-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630DA8
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
|
|
SCNpilot_expt_500_bf_scaffold_605_8
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5130..5303
|
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630DA9
Uncharacterized protein {ECO:0000313|EMBL:KKB83503.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_605_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5362..7212)
|
iron transporter FeoB n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030BA9C7
rbh
Iron transporter FeoB {ECO:0000313|EMBL:AJP73546.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ferrous iron transport protein B; K04759 ferrous iron transport protein B
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7209..7481)
|
iron transporter FeoA n=1 Tax=Sphingomonas elodea RepID=UPI00026319C8
Iron transporter FeoA {ECO:0000313|EMBL:AJP73547.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
feoA; Fe2+ transport system protein A; K04758 ferrous iron transport protein A
|
|
SCNpilot_expt_500_bf_scaffold_605_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7600..8259)
|
rpsU-divergently transcribed protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F51FE5
rbh
RpsU-divergently transcribed {ECO:0000313|EMBL:AJP73548.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative ubiquinone biosynthesis protein
|
|
SCNpilot_expt_500_bf_scaffold_605_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8256..9185)
|
permease n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCACF
rbh
Sphingomonas taxi strain 30a NODE_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26493.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_13
Pseudomonas rhizosphaerae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9242..10294
|
NADH:flavin oxidoreductase n=1 Tax=Sphingomonas elodea RepID=UPI00026319E2
rbh
NADH:flavin oxidoreductase {ECO:0000313|EMBL:AIS17958.1}; TaxID=216142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas rhizosphaerae.;"
NADH:flavin oxidoreductase
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_14
unknown
|
Not on your lists |
comp(10291..10755)
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_605_15
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10761..11180)
|
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2F3_9SPHN
ribH; 6,7-dimethyl-8-ribityllumazine synthase
|
|
SCNpilot_expt_500_bf_scaffold_605_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11182..12330)
|
ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Sphingomonas elodea RepID=UPI00026319E5
rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:AJP73553.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12317..12940)
|
ribE; riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9]
riboflavin synthase subunit alpha n=1 Tax=Sphingomonas elodea RepID=UPI00026319E6
rbh
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:AJP73554.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12940..13866)
|
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Sphingomonas sp. S17 RepID=F3WYB1_9SPHN
rbh
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:AJP74673.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13881..14282)
|
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D56
Uncharacterized protein {ECO:0000313|EMBL:AJP73555.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14296..14967)
|
TonB-like protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D57
Energy transducer TonB {ECO:0000313|EMBL:AJP73556.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB family protein; K03832 periplasmic protein TonB
|
|
SCNpilot_expt_500_bf_scaffold_605_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15053..16180)
|
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glutamyl-tRNA ligase (EC:6.1.1.17)
glutamyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D82754
|
|
SCNpilot_expt_500_bf_scaffold_605_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16368..16910)
|
Uncharacterized protein {ECO:0000313|EMBL:CDP51199.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
|
|
SCNpilot_expt_500_bf_scaffold_605_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16981..17916
|
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
rbh
ribose-phosphate pyrophosphokinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631D59
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18014..18763)
|
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D5A
rbh
Membrane protein {ECO:0000313|EMBL:AJP73559.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative permease
|
|
SCNpilot_expt_500_bf_scaffold_605_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18860..19183
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E6B970
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:AJP73560.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K07145
|
|
SCNpilot_expt_500_bf_scaffold_605_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19180..20466
|
multidrug transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031EA1E9
rbh
MFS transporter {ECO:0000313|EMBL:AJP73561.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
major facilitator superfamily transporter
|
|
SCNpilot_expt_500_bf_scaffold_605_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20504..22798)
|
ATPase AAA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DF4395
rbh
ATPase AAA {ECO:0000313|EMBL:AJP73562.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
AAA ATPase
rbh
|
|
SCNpilot_expt_500_bf_scaffold_605_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23129..23989
|
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F36C20
rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP73563.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator
|
|
SCNpilot_expt_500_bf_scaffold_605_29
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24034..25503)
|
cyclophilin type peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
peptidyl-prolyl cis-trans isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003025160
|
|
SCNpilot_expt_500_bf_scaffold_605_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25532..25951
|
magnesium transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A80C
magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
|