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SCNpilot_expt_500_bf_scaffold_605

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_605_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1006
DNA (1005bp) protein (335aa)
Monoamine oxidase (EC:1.4.3.4)
amine oxidase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCAD9 rbh
Amine oxidase {ECO:0000313|EMBL:AJP73539.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_605_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1039..2175
DNA (1137bp) protein (379aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31] rbh
homoserine O-acetyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630B32 rbh
SCNpilot_expt_500_bf_scaffold_605_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2172..2609
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003623FF9
GNAT family acetyltransferase {ECO:0000313|EMBL:AJP73541.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N-acetyltransferase GCN5
SCNpilot_expt_500_bf_scaffold_605_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2606..3193
DNA (588bp) protein (196aa)
methionine biosynthesis protein MetW n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FACBA4 rbh
SAM-dependent methyltransferase {ECO:0000313|EMBL:AJP73542.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
metW; SAM-dependent methyltransferase
SCNpilot_expt_500_bf_scaffold_605_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3198..4052
DNA (855bp) protein (285aa)
nuclease PIN n=1 Tax=Sphingomonas elodea RepID=UPI0002630B34 rbh
Nuclease PIN {ECO:0000313|EMBL:AJP73543.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pirin; K06911 rbh
SCNpilot_expt_500_bf_scaffold_605_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4063..4497)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EA124B
Uncharacterized protein {ECO:0000313|EMBL:AJP73544.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_605_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4516..5088)
DNA (573bp) protein (191aa)
single-stranded DNA-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630DA8
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_605_8
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5130..5303
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630DA9
Uncharacterized protein {ECO:0000313|EMBL:KKB83503.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_605_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5362..7212)
DNA (1851bp) protein (617aa)
iron transporter FeoB n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030BA9C7 rbh
Iron transporter FeoB {ECO:0000313|EMBL:AJP73546.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ferrous iron transport protein B; K04759 ferrous iron transport protein B rbh
SCNpilot_expt_500_bf_scaffold_605_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7209..7481)
DNA (273bp) protein (91aa)
iron transporter FeoA n=1 Tax=Sphingomonas elodea RepID=UPI00026319C8
Iron transporter FeoA {ECO:0000313|EMBL:AJP73547.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
feoA; Fe2+ transport system protein A; K04758 ferrous iron transport protein A
SCNpilot_expt_500_bf_scaffold_605_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7600..8259)
DNA (660bp) protein (220aa)
rpsU-divergently transcribed protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F51FE5 rbh
RpsU-divergently transcribed {ECO:0000313|EMBL:AJP73548.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative ubiquinone biosynthesis protein
SCNpilot_expt_500_bf_scaffold_605_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8256..9185)
DNA (930bp) protein (310aa)
permease n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCACF rbh
Sphingomonas taxi strain 30a NODE_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26493.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_605_13
Pseudomonas rhizosphaerae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9242..10294
DNA (1053bp) protein (351aa)
NADH:flavin oxidoreductase n=1 Tax=Sphingomonas elodea RepID=UPI00026319E2 rbh
NADH:flavin oxidoreductase {ECO:0000313|EMBL:AIS17958.1}; TaxID=216142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas rhizosphaerae.;"
NADH:flavin oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_605_14
unknown

Not on your lists

comp(10291..10755)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_605_15
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10761..11180)
DNA (420bp) protein (140aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2F3_9SPHN
ribH; 6,7-dimethyl-8-ribityllumazine synthase
SCNpilot_expt_500_bf_scaffold_605_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11182..12330)
DNA (1149bp) protein (383aa)
ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Sphingomonas elodea RepID=UPI00026319E5 rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:AJP73553.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_605_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12317..12940)
DNA (624bp) protein (208aa)
ribE; riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9]
riboflavin synthase subunit alpha n=1 Tax=Sphingomonas elodea RepID=UPI00026319E6 rbh
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:AJP73554.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_605_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12940..13866)
DNA (927bp) protein (309aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Sphingomonas sp. S17 RepID=F3WYB1_9SPHN rbh
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:AJP74673.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_605_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13881..14282)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D56
Uncharacterized protein {ECO:0000313|EMBL:AJP73555.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_605_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14296..14967)
DNA (672bp) protein (224aa)
TonB-like protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D57
Energy transducer TonB {ECO:0000313|EMBL:AJP73556.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB family protein; K03832 periplasmic protein TonB
SCNpilot_expt_500_bf_scaffold_605_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15053..16180)
DNA (1128bp) protein (376aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glutamyl-tRNA ligase (EC:6.1.1.17)
glutamyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D82754
SCNpilot_expt_500_bf_scaffold_605_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16368..16910)
DNA (543bp) protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP51199.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_500_bf_scaffold_605_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16981..17916
DNA (936bp) protein (312aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source
ribose-phosphate pyrophosphokinase (EC:2.7.6.1) rbh
ribose-phosphate pyrophosphokinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631D59 rbh
SCNpilot_expt_500_bf_scaffold_605_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18014..18763)
DNA (750bp) protein (250aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D5A rbh
Membrane protein {ECO:0000313|EMBL:AJP73559.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative permease
SCNpilot_expt_500_bf_scaffold_605_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18860..19183
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E6B970
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:AJP73560.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K07145
SCNpilot_expt_500_bf_scaffold_605_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19180..20466
DNA (1287bp) protein (429aa)
multidrug transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031EA1E9 rbh
MFS transporter {ECO:0000313|EMBL:AJP73561.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_605_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20504..22798)
DNA (2295bp) protein (765aa)
ATPase AAA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DF4395 rbh
ATPase AAA {ECO:0000313|EMBL:AJP73562.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
AAA ATPase rbh
SCNpilot_expt_500_bf_scaffold_605_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23129..23989
DNA (861bp) protein (287aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F36C20 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP73563.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_605_29
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24034..25503)
DNA (1470bp) protein (490aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
peptidyl-prolyl cis-trans isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003025160
SCNpilot_expt_500_bf_scaffold_605_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25532..25951
DNA (420bp) protein (140aa)
magnesium transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A80C
magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Displaying items 1-30 of 62 in total

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