name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_760_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1..2295
|
cell division protein FtsK n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E95A34
rbh
Cell division protein FtsK {ECO:0000313|EMBL:AJP73653.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
|
|
SCNpilot_expt_500_bf_scaffold_760_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2384..2998
|
cell envelope biogenesis protein LolA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037092B7
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
outer membrane lipoprotein carrier protein LolA
|
|
SCNpilot_expt_500_bf_scaffold_760_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3335..4117
|
exodeoxyribonuclease III n=1 Tax=Sphingomonas elodea RepID=UPI00026312B8
rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:AJP74680.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_760_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4168..5157
|
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
GTP cyclohydrolase n=1 Tax=Sphingomonas elodea RepID=UPI00026312B9
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5334..5594
|
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B5AE90
Uncharacterized protein {ECO:0000313|EMBL:AJP73618.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_760_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5633..6295)
|
haloacid dehalogenase n=1 Tax=Sphingomonas elodea RepID=UPI00026312BB
rbh
Haloacid dehalogenase {ECO:0000313|EMBL:AJP73617.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HAD-superfamily hydrolase
|
|
SCNpilot_expt_500_bf_scaffold_760_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6292..6960)
|
alanine racemase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D5C8AE
rbh
Alanine racemase {ECO:0000313|EMBL:AJP73616.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K06997
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6983..7510
|
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
thiamine monophosphate synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003142D12
Thiamine monophosphate synthase {ECO:0000313|EMBL:AJP73615.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_760_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7693..8415)
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000380F1AD
Uncharacterized protein {ECO:0000313|EMBL:AJP74679.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_760_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8597..9034
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FFB607
Uncharacterized protein {ECO:0000313|EMBL:AJP73614.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_760_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9112..11649
|
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
leuS; leucyl-tRNA ligase (EC:6.1.1.4)
leucyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E8E227
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11646..12149
|
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026312C1
Secreted (Periplasmic)-like protein {ECO:0000313|EMBL:AJP73612.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
secreted (periplasmic)-like protein; K03643 LPS-assembly lipoprotein
|
|
SCNpilot_expt_500_bf_scaffold_760_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12146..13162
|
DNA polymerase III delta subunit; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III subunit delta n=1 Tax=Sphingomonas elodea RepID=UPI00026312C2
rbh
DNA polymerase III subunit delta {ECO:0000313|EMBL:AJP73611.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_760_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13304..13675
|
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VA08_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ69124.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
|
|
SCNpilot_expt_500_bf_scaffold_760_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13715..14596)
|
chromosome partitioning protein ParB n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F48926
rbh
Chromosome partitioning protein ParB {ECO:0000313|EMBL:AJP73610.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
parB-like partition protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14593..15375)
|
chromosome partitioning protein ParA n=1 Tax=Sphingomonas elodea RepID=UPI000263160D
rbh
Chromosome partitioning protein ParA {ECO:0000313|EMBL:AJP73609.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15372..15995)
|
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gidB; putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
16S rRNA methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI000263160E
|
|
SCNpilot_expt_500_bf_scaffold_760_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15992..17824)
|
tRNA uridine 5-carboxymethylaminomethyl modification protein n=1 Tax=Sphingomonas elodea RepID=UPI000263160F
rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
|
|
SCNpilot_expt_500_bf_scaffold_760_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17882..19165)
|
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thdF; tRNA modification GTPase; K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase TrmE n=1 Tax=Sphingomonas elodea RepID=UPI0002631610
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19165..19398)
|
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631611
Uncharacterized protein {ECO:0000313|EMBL:AJP73605.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_760_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19590..20291
|
carboxymethylenebutenolidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FFDBD5
rbh
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26422.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
|
|
SCNpilot_expt_500_bf_scaffold_760_22
unknown
|
Not on your lists |
comp(20335..20922)
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_760_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20935..21636)
|
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030C1DE8
rbh
Membrane protein {ECO:0000313|EMBL:AJP73602.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
integral membrane protein TerC
|
|
SCNpilot_expt_500_bf_scaffold_760_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21741..22997)
|
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884, ECO:0000313|EMBL:AJP73601.1}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcription termination factor Rho n=1 Tax=Sphingomonas elodea RepID=UPI0002631615
rbh
rho; transcription termination factor Rho
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23226..23678)
|
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631616
Membrane protein {ECO:0000313|EMBL:AJP73600.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K08973 putative membrane protein
|
|
SCNpilot_expt_500_bf_scaffold_760_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23704..24654)
|
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
uroporphyrinogen decarboxylase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D41BBB
rbh
|
|
SCNpilot_expt_500_bf_scaffold_760_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25034..25855
|
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
PEP synthetase regulatory protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631618
rbh
PEP synthetase regulatory protein
|
|
SCNpilot_expt_500_bf_scaffold_760_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26385..26975
|
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
shikimate dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI000263161A
|
|
SCNpilot_expt_500_bf_scaffold_760_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26935..27156
|
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
shikimate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031E6712
|
|
SCNpilot_expt_500_bf_scaffold_760_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27153..27686
|
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:AJP73596.1}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
dephospho-CoA kinase n=1 Tax=Sphingomonas elodea RepID=UPI000263161B
|