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SCNpilot_expt_500_bf_scaffold_792

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_792_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..346)
DNA (345bp) protein (115aa)
leucine dehydrogenase (EC:1.4.1.9); K00263 leucine dehydrogenase [EC:1.4.1.9]
leucine dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002631D88
Amino acid dehydrogenase {ECO:0000313|EMBL:AJP71766.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_792_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

534..938
DNA (405bp) protein (135aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037C2B11
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KGB51951.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_792_3
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1003..2106
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4R841_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ87588.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_792_4
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2267..5134
DNA (2868bp) protein (956aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6X6_CAUSK rbh
TonB-dependent receptor rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_expt_500_bf_scaffold_792_5
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5252..7153
DNA (1902bp) protein (634aa)
glycoside hydrolase family protein; K01188 beta-glucosidase [EC:3.2.1.21]
Glycosyl hydrolase family 3 N terminal domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WB61_9CAUL rbh
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
SCNpilot_expt_500_bf_scaffold_792_6
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7240..8751
DNA (1512bp) protein (504aa)
tryptophan halogenase; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7] rbh
Tryptophan halogenase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6X7_CAUSK rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_expt_500_bf_scaffold_792_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8793..9779)
DNA (987bp) protein (329aa)
PASs1-related protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6X8_CAUSK rbh
PASs1-like protein rbh
PASs1-related protein {ECO:0000313|EMBL:ABZ71193.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_792_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10097..11500
DNA (1404bp) protein (468aa)
glycoside hydrolase family protein; K01201 glucosylceramidase [EC:3.2.1.45] rbh
Glycoside hydrolase family 30 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6Y0_CAUSK rbh
Glycoside hydrolase family 30 {ECO:0000313|EMBL:ABZ71195.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_792_9
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11729..12724
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035C141A
major facilitator superfamily transporter
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_500_bf_scaffold_792_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12708..13985)
DNA (1278bp) protein (426aa)
Alginate lyase n=1 Tax=Caulobacter sp. AP07 RepID=J2ZLU4_9CAUL rbh
Alginate lyase {ECO:0000313|EMBL:EJL20266.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_792_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14045..15427)
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003616EDC
TonB-dependent receptor {ECO:0000313|EMBL:ENZ81968.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_792_12
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15415..17091)
DNA (1677bp) protein (559aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003616EDC rbh
TonB-dependent receptor {ECO:0000313|EMBL:ENZ81968.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_792_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17417..18817)
DNA (1401bp) protein (467aa)
NodT family RND efflux system outer membrane lipoprotein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USL2_9SPHN
RND transporter {ECO:0000313|EMBL:AJP71755.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
outer membrane efflux protein
SCNpilot_expt_500_bf_scaffold_792_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18814..22059)
DNA (3246bp) protein (1082aa)
Multidrug-efflux system, acriflavin resistance protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9US74_9SPHN rbh
RND transporter {ECO:0000313|EMBL:AJP71754.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
multidrug-efflux system, acriflavin resistance protein rbh
SCNpilot_expt_500_bf_scaffold_792_15
unknown

Not on your lists

comp(22070..22213)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_792_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22207..23256)
DNA (1050bp) protein (350aa)
Putative efflux pump periplasmic linker protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCW1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP71753.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_500_bf_scaffold_792_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23428..24030
DNA (603bp) protein (201aa)
TetR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1G7_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:ENY81312.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcriptional regulator, TetR family
SCNpilot_expt_500_bf_scaffold_792_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24032..25099
DNA (1068bp) protein (356aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
dinB; DNA polymerase IV 2 (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] rbh
DNA polymerase IV n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000375F82D rbh
SCNpilot_expt_500_bf_scaffold_792_19
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25126..27294)
DNA (2169bp) protein (723aa)
Penicillin acylase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BDN2_STRRD rbh
penicillin acylase rbh
Penicillin acylase {ECO:0000313|EMBL:ACZ88124.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_500_bf_scaffold_792_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27321..27788)
DNA (468bp) protein (156aa)
nucleoside diphosphate kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E8BA85
Nucleoside diphosphate kinase {ECO:0000313|EMBL:AJP70721.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
GreA/GreB family elongation factor
SCNpilot_expt_500_bf_scaffold_792_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27785..28846)
DNA (1062bp) protein (354aa)
aldo/keto reductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031D9AD8 rbh
Aldo/keto reductase {ECO:0000313|EMBL:AJP70722.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aldo/keto reductase rbh
SCNpilot_expt_500_bf_scaffold_792_22
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28895..29248)
DNA (354bp) protein (118aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VAE9_SPHWW
iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:ABQ69265.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_792_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29248..29724)
DNA (477bp) protein (159aa)
FeS assembly SUF system protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E30CAC
FeS assembly SUF system protein {ECO:0000313|EMBL:AJP70724.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
FeS assembly SUF system protein
SCNpilot_expt_500_bf_scaffold_792_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29721..30932)
DNA (1212bp) protein (404aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cysteine desulfurase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003190735 rbh
cysteine desulfurase rbh
SCNpilot_expt_500_bf_scaffold_792_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30929..32014)
DNA (1086bp) protein (362aa)
SufBD protein n=1 Tax=Sphingomonas elodea RepID=UPI00026302C8 rbh
SufBD protein {ECO:0000313|EMBL:AJP70726.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SufBD protein; K09015 Fe-S cluster assembly protein SufD rbh
SCNpilot_expt_500_bf_scaffold_792_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32011..32316)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR72_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80829.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_792_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32313..33056)
DNA (744bp) protein (248aa)
transporter n=1 Tax=Sphingomonas elodea RepID=UPI00026302C9 rbh
Cysteine desulfurase {ECO:0000313|EMBL:AJP74177.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
FeS assembly ATPase SufC
SCNpilot_expt_500_bf_scaffold_792_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33081..33641)
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP70730.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_792_29
unknown

Not on your lists

comp(33638..34039)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_792_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34039..34962)
DNA (924bp) protein (308aa)
FeS assembly protein SufB n=1 Tax=Sphingomonas sp. S17 RepID=F3WWI1_9SPHN
Cysteine desulfurase {ECO:0000313|EMBL:AJP70731.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sufB; Fe-S cluster assembly protein SufB; K09014 Fe-S cluster assembly protein SufB
Displaying items 1-30 of 33 in total

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