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SCNpilot_expt_500_bf_scaffold_4851

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4851_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1190
-----------------
DNA (1188bp)
protein (396aa)
Uncharacterized protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X6D2_ACISM rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74346.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_4851_2
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1215..1694
-----------------
DNA (480bp)
protein (160aa)
UPI0003CE8BAF related cluster n=1 Tax=unknown RepID=UPI0003CE8BAF
Uncharacterized protein {ECO:0000313|EMBL:AHE54010.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4851_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1707..2606
-----------------
DNA (900bp)
protein (300aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000380D8C4
Uncharacterized protein {ECO:0000313|EMBL:AHE54009.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
yocS; sodium-dependent transporter yocS
SCNpilot_expt_500_bf_scaffold_4851_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2773..3657
-----------------
DNA (885bp)
protein (295aa)
oxidoreductase (EC:1.-.-.-)
Probable oxidoreductase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IK46_BORPD
Uncharacterized protein {ECO:0000313|EMBL:AHE54008.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_4851_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3672..4034
-----------------
DNA (363bp)
protein (121aa)
FAD dependent oxidoreductase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HCD5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHE54008.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
FAD dependent oxidoreductase
SCNpilot_expt_500_bf_scaffold_4851_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4069..5781
-----------------
DNA (1713bp)
protein (571aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QF00_BRESC rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54007.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_4851_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5884..7317)
-----------------
DNA (1434bp)
protein (478aa)
Indolepyruvate oxidoreductase subunit B {ECO:0000313|EMBL:AJP74345.1}; EC=1.2.7.8 {ECO:0000313|EMBL:AJP74345.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative indolepyruvate oxidoreductase subunit B (EC:1.2.7.8); K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
indolepyruvate oxidoreductase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB6F rbh
SCNpilot_expt_500_bf_scaffold_4851_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7317..8360)
-----------------
DNA (1044bp)
protein (348aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
indolepyruvate ferredoxin subunit alpha n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB6E
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:AJP71660.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_4851_9
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8630..9433
-----------------
DNA (804bp)
protein (268aa)
UPI0003CEDBBB related cluster n=1 Tax=unknown RepID=UPI0003CEDBBB
Uncharacterized protein {ECO:0000313|EMBL:ESX73494.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
SCNpilot_expt_500_bf_scaffold_4851_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9381..10160)
-----------------
DNA (780bp)
protein (260aa)
cyclase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB6D rbh
Cyclase {ECO:0000313|EMBL:AJP71659.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cyclase family protein
SCNpilot_expt_500_bf_scaffold_4851_11
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10198..12051)
-----------------
DNA (1854bp)
protein (618aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2S1_9PROT rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_500_bf_scaffold_4851_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12181..13533
-----------------
DNA (1353bp)
protein (451aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PAM7_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:AJP71658.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
amidohydrolase
SCNpilot_expt_500_bf_scaffold_4851_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13610..14131)
-----------------
DNA (522bp)
protein (174aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6E420
Uncharacterized protein {ECO:0000313|EMBL:AHE54002.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_4851_14
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14407..15735
-----------------
DNA (1329bp)
protein (443aa)
Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KIH2_9GAMM rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_500_bf_scaffold_4851_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15777..16952)
-----------------
DNA (1176bp)
protein (392aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SDW2_9SPHN rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71675.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acyl-CoA dehydrogenase domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_4851_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16964..17368)
-----------------
DNA (405bp)
protein (135aa)
Endoribonuclease L-PSP n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATR8_RUBXD
Endoribonuclease L-PSP {ECO:0000313|EMBL:AJP74347.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
endoribonuclease L-PSP
SCNpilot_expt_500_bf_scaffold_4851_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17365..17769)
-----------------
DNA (405bp)
protein (135aa)
thioesterase superfamily protein; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
Thioesterase superfamily protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ41_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP71674.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_4851_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17769..18275)
-----------------
DNA (507bp)
protein (169aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00036F22FF
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71673.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_4851_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18826..19641)
-----------------
DNA (816bp)
protein (272aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:AJP71672.1}; EC=4.2.1.17 {ECO:0000313|EMBL:AJP71672.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
enoyl-CoA hydratase (EC:4.2.1.17)
enoyl-CoA hydratase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB63 rbh
SCNpilot_expt_500_bf_scaffold_4851_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19638..20129)
-----------------
DNA (492bp)
protein (164aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4I1_SPHWW
MarR family transcriptional regulator {ECO:0000313|EMBL:AJP71671.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_4851_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20126..20815)
-----------------
DNA (690bp)
protein (230aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00035C80CC
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71670.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_4851_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20821..23124)
-----------------
DNA (2304bp)
protein (768aa)
salicylyl-CoA 5-hydroxylase; K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40] rbh
salicylyl-CoA 5-hydroxylase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB60
Salicylyl-CoA 5-hydroxylase {ECO:0000313|EMBL:AJP71669.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_4851_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23266..24435
-----------------
DNA (1170bp)
protein (390aa)
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000376F6AE
Aspartate aminotransferase {ECO:0000313|EMBL:AJP71668.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_4851_24
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24471..26057
-----------------
DNA (1587bp)
protein (529aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A90A73 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE52718.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4851_25
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26227..29487)
-----------------
DNA (3261bp)
protein (1087aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003769051 rbh
Uncharacterized protein {ECO:0000313|EMBL:ERP95951.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
autotransporter
SCNpilot_expt_500_bf_scaffold_4851_26
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29586..31553)
-----------------
DNA (1968bp)
protein (656aa)
Putative uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AT31_MARMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ86502.1}; Flags: Fragment;; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
hypothetical protein
Displaying 26 items

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