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SCNpilot_expt_500_bf_scaffold_2502

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2502_1
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..921
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJH2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT02282.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2502_2
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1148..3580
DNA (2433bp) protein (811aa)
hypothetical protein, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4C18D rbh
sensor histidine kinase rbh
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_500_bf_scaffold_2502_3
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3717..6341
DNA (2625bp) protein (875aa)
Restriction endonuclease, type I, R subunit/Type III, Res subunit n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PII6_PSEUV rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO86285.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
Restriction endonuclease, type I, R subunit/Type III, Res subunit rbh
SCNpilot_expt_500_bf_scaffold_2502_4
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6424..7083
DNA (660bp) protein (220aa)
Two-component response regulator protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SIM7_9SPHN
Two-component response regulator protein {ECO:0000313|EMBL:EZP81260.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
transcription response regulator protein; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_500_bf_scaffold_2502_5
unknown

Not on your lists

comp(7065..7388)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2502_6
unknown

Not on your lists

comp(7632..7919)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2502_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8474..9724
DNA (1251bp) protein (417aa)
secretion protein HlyD n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40C3D
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EZP49022.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_expt_500_bf_scaffold_2502_8
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9730..12870
DNA (3141bp) protein (1047aa)
cytochrome C peroxidase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002894633
Putative heavy metal efflux system protein {ECO:0000313|EMBL:GAM02445.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
heavy metal efflux pump CzcA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_expt_500_bf_scaffold_2502_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12867..14309
DNA (1443bp) protein (481aa)
metal transporter n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002881583
Putative outer membrane efflux protein {ECO:0000313|EMBL:GAM02446.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
putative efflux pump outer membrane
SCNpilot_expt_500_bf_scaffold_2502_10
unknown

Not on your lists

14322..15083
DNA (762bp) protein (254aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2502_11

Not on your lists

comp(15099..15995)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036D9249
LysR substrate binding domain {ECO:0000313|EMBL:AGU11809.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2502_12
unknown

Not on your lists

16100..16249
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2502_13
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16246..16923)
DNA (678bp) protein (226aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USH7_9SPHN
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:AJA09086.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_2502_14
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17115..19493)
DNA (2379bp) protein (793aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USH7_9SPHN
TonB-denpendent receptor {ECO:0000313|EMBL:EYR69965.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_2502_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19614..20405)
DNA (792bp) protein (264aa)
hypothetical protein, partial n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000367979A
FecR family protein {ECO:0000313|EMBL:EZP49999.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_expt_500_bf_scaffold_2502_16
unknown

Not on your lists

comp(20402..20635)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2502_17
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20632..21171)
DNA (540bp) protein (180aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ16_9SPHN
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:KGB53961.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_2502_18
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21328..22029)
DNA (702bp) protein (234aa)
lipolytic protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB114
Alpha/beta hydrolase fold-3 protein
Alpha/beta hydrolase fold-3 protein {ECO:0000313|EMBL:AGH51058.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_2502_19

Not on your lists

comp(22285..24522)
DNA (2238bp) protein (746aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB113 rbh
TonB-dependent receptor, plug {ECO:0000313|EMBL:EQD80768.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_2502_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24644..25669)
DNA (1026bp) protein (342aa)
LacI family transcriptional regulator (EC:5.1.1.1)
periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB112 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC31430.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_500_bf_scaffold_2502_21
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25924..26562
DNA (639bp) protein (213aa)
AMP-dependent synthetase/ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-binding domain protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB111
AMP-binding enzyme family protein {ECO:0000313|EMBL:AIO37506.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
SCNpilot_expt_500_bf_scaffold_2502_22
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26552..27811
DNA (1260bp) protein (420aa)
AMP-binding domain-containing protein; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
AMP-binding domain protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB111 rbh
AMP-binding protein {ECO:0000313|EMBL:AJW45499.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
SCNpilot_expt_500_bf_scaffold_2502_23
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27892..29175)
DNA (1284bp) protein (428aa)
GntR family transcriptional regulator (EC:2.6.1.39) rbh
GntR family transcriptional regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B6C0D9 rbh
Transcriptional regulator with HTH domain and aminotransferase domain-containing protein {ECO:0000313|EMBL:EJL57853.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_500_bf_scaffold_2502_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29355..30113
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Q3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37182.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07090 rbh
SCNpilot_expt_500_bf_scaffold_2502_25
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30274..30594
DNA (321bp) protein (107aa)
membrane protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C5F46
Membrane protein {ECO:0000313|EMBL:EQB19772.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
SCNpilot_expt_500_bf_scaffold_2502_26
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30672..32357)
DNA (1686bp) protein (562aa)
TonB-dependent receptor n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TA32_9PROT
TonB-dependent receptor-like protein {ECO:0000313|EMBL:KGB52707.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor plug
Displaying 26 items

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